Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Tes-202ENSMUST00000115467 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
Ddb1Q3U1J4 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Unc5a-201ENSMUST00000026994 3995 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Zfp422-203ENSMUST00000112880 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Rps8-201ENSMUST00000102696 860 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Nudt1-203ENSMUST00000110825 599 ntTSL 2 BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Gm6460-202ENSMUST00000163787 821 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Gm8879-201ENSMUST00000170260 1125 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 4933402N22Rik-202ENSMUST00000170301 1092 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Cox6b2-204ENSMUST00000182173 391 ntTSL 2 BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Gm43403-202ENSMUST00000198830 370 ntTSL 3 BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Sox2ot-216ENSMUST00000200092 767 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Gm44780-201ENSMUST00000205409 581 ntTSL 3 BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Tifa-203ENSMUST00000164447 1538 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Lgr6-201ENSMUST00000044828 6675 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Ddb1Q3U1J4 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Prok2-202ENSMUST00000032152 1423 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Nadk2-203ENSMUST00000100790 3665 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Trim11-201ENSMUST00000093061 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Rnaseh2a-210ENSMUST00000147812 1532 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Gm15429-201ENSMUST00000151268 798 ntBASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Gm9299-201ENSMUST00000206392 1140 ntBASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Ccdc159-204ENSMUST00000216710 1126 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Gm15557-201ENSMUST00000109629 1380 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
Ddb1Q3U1J4 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 G3bp2-209ENSMUST00000202258 1884 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 AC163637.1-201ENSMUST00000215491 1894 ntBASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 Gm16282-201ENSMUST00000162641 451 ntTSL 3 BASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 Pomc-202ENSMUST00000218089 977 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 Oit1-201ENSMUST00000022269 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 Gm8775-201ENSMUST00000170943 1327 ntBASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Ddb1Q3U1J4 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Ddb1Q3U1J4 Plekhh3-201ENSMUST00000043397 3056 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
Ddb1Q3U1J4 Psmd12-201ENSMUST00000021063 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 2610027K06Rik-203ENSMUST00000140673 2076 ntTSL 5 BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Gm12928-201ENSMUST00000117115 573 ntBASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Carmn-202ENSMUST00000182244 988 ntTSL 2 BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Gm27572-201ENSMUST00000183702 255 ntBASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Gm29127-201ENSMUST00000188304 517 ntBASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Degs2-201ENSMUST00000021691 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 AC122459.1-201ENSMUST00000228373 885 ntBASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Dera-207ENSMUST00000203693 1446 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Racgap1-201ENSMUST00000023756 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Ddb1Q3U1J4 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Ddb1Q3U1J4 Phf23-209ENSMUST00000153684 1797 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 32.3 ms