Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Lig3P97386 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Lig3P97386 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Lig3P97386 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
Lig3P97386 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Lig3P97386 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC16.01■□□□□ 0.15
Lig3P97386 BC037039-201ENSMUST00000192003 2205 ntBASIC16■□□□□ 0.15
Lig3P97386 Siglecf-203ENSMUST00000122423 2607 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 AC154767.3-201ENSMUST00000225150 1342 ntBASIC16■□□□□ 0.15
Lig3P97386 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Lig3P97386 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC16■□□□□ 0.15
Lig3P97386 Snn-201ENSMUST00000089011 2902 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Lig3P97386 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 Zfp568-203ENSMUST00000148442 4005 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC16■□□□□ 0.15
Lig3P97386 Gm22065-201ENSMUST00000103753 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm22066-201ENSMUST00000103761 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm24932-201ENSMUST00000103763 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm24115-201ENSMUST00000103799 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm22190-201ENSMUST00000103827 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm22191-201ENSMUST00000103831 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm24721-201ENSMUST00000103849 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm28018-201ENSMUST00000103869 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm26399-201ENSMUST00000103937 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
Lig3P97386 Pfdn6-204ENSMUST00000174048 560 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
Lig3P97386 Gm25349-201ENSMUST00000177728 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm23616-201ENSMUST00000177797 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm25871-201ENSMUST00000177816 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm24752-201ENSMUST00000178240 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm24496-201ENSMUST00000178287 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm25649-201ENSMUST00000178476 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm25548-201ENSMUST00000178681 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm23147-201ENSMUST00000178841 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm26095-201ENSMUST00000179270 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm22171-201ENSMUST00000179283 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm23936-201ENSMUST00000179354 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm22619-201ENSMUST00000179516 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm25255-201ENSMUST00000179579 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm24755-201ENSMUST00000179691 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm26506-201ENSMUST00000179692 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm25086-201ENSMUST00000179931 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm23243-201ENSMUST00000180047 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm24659-201ENSMUST00000180212 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm24169-201ENSMUST00000180244 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm23689-201ENSMUST00000180354 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm27359-201ENSMUST00000184153 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm27785-201ENSMUST00000184268 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm27466-201ENSMUST00000184396 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm27703-201ENSMUST00000184836 110 ntBASIC16■□□□□ 0.15
Lig3P97386 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC16■□□□□ 0.15
Lig3P97386 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Lig3P97386 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC16■□□□□ 0.15
Lig3P97386 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Lig3P97386 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC16■□□□□ 0.15
Lig3P97386 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 Il1rn-204ENSMUST00000114487 2474 ntTSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
Lig3P97386 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Neurl1a-201ENSMUST00000111807 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Elmo2-203ENSMUST00000094329 3466 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Nt5e-201ENSMUST00000034992 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC15.99■□□□□ 0.15
Lig3P97386 Ripor2-201ENSMUST00000038477 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Rnf38-202ENSMUST00000098098 5061 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Lig3P97386 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Lig3P97386 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC15.99■□□□□ 0.15
Lig3P97386 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC15.99■□□□□ 0.15
Lig3P97386 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Lig3P97386 1500015A07Rik-203ENSMUST00000184678 890 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Gm34866-201ENSMUST00000196146 515 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC15.99■□□□□ 0.15
Lig3P97386 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Lig3P97386 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Ikzf5-202ENSMUST00000121033 2231 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Pcbp3-206ENSMUST00000168465 1748 ntAPPRIS P3 TSL 5 BASIC15.99■□□□□ 0.15
Lig3P97386 Irak1-204ENSMUST00000114352 3825 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Lig3P97386 Tfap2a-203ENSMUST00000223869 2037 ntBASIC15.99■□□□□ 0.15
Lig3P97386 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 61.4 ms