Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp47Q8BY87 P3h1-203ENSMUST00000102662 2977 ntAPPRIS P3 TSL 5 BASIC20.63■□□□□ 0.89
Usp47Q8BY87 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC20.62■□□□□ 0.89
Usp47Q8BY87 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp47Q8BY87 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp47Q8BY87 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Usp47Q8BY87 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
Usp47Q8BY87 5430431A17Rik-201ENSMUST00000206342 795 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Usp47Q8BY87 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC20.62■□□□□ 0.89
Usp47Q8BY87 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Usp47Q8BY87 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp47Q8BY87 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp47Q8BY87 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp47Q8BY87 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp47Q8BY87 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
Usp47Q8BY87 Zfp710-201ENSMUST00000049680 4721 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp47Q8BY87 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Usp47Q8BY87 Rspo4-201ENSMUST00000042217 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp47Q8BY87 Eef1d-204ENSMUST00000089681 2152 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Usp47Q8BY87 Gm37305-201ENSMUST00000195714 4279 ntBASIC20.62■□□□□ 0.89
Usp47Q8BY87 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp47Q8BY87 Sem1-201ENSMUST00000041111 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Usp47Q8BY87 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Aifm3-202ENSMUST00000115685 2357 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Elovl1-201ENSMUST00000006557 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 AC121598.1-201ENSMUST00000228224 1019 ntBASIC20.61■□□□□ 0.89
Usp47Q8BY87 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Gm45751-201ENSMUST00000210185 1573 ntBASIC20.61■□□□□ 0.89
Usp47Q8BY87 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Gm17108-201ENSMUST00000168625 2877 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Csnk1e-202ENSMUST00000120859 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 B130055M24Rik-201ENSMUST00000144796 1778 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Rnf25-201ENSMUST00000027357 1479 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Pdgfrl-201ENSMUST00000034004 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Usp47Q8BY87 Clnkos-201ENSMUST00000114080 439 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Usp47Q8BY87 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC20.6■□□□□ 0.89
Usp47Q8BY87 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp47Q8BY87 Cox6b2-203ENSMUST00000182111 585 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp47Q8BY87 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Usp47Q8BY87 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Usp47Q8BY87 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp47Q8BY87 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp47Q8BY87 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC20.6■□□□□ 0.89
Usp47Q8BY87 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp47Q8BY87 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp47Q8BY87 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp47Q8BY87 Pgap2-225ENSMUST00000156529 2034 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp47Q8BY87 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp47Q8BY87 Grik2-210ENSMUST00000220263 2085 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Usp47Q8BY87 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Usp47Q8BY87 Itm2b-201ENSMUST00000022704 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Gm15487-201ENSMUST00000122373 465 ntBASIC20.59■□□□□ 0.89
Usp47Q8BY87 Mcfd2-202ENSMUST00000129616 813 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Mocs2-207ENSMUST00000166104 1193 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC20.59■□□□□ 0.89
Usp47Q8BY87 Zfp707-201ENSMUST00000109966 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Map2k7-211ENSMUST00000145165 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Sirt3-202ENSMUST00000106048 1416 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Pid1-204ENSMUST00000176559 1564 ntTSL 2 BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Gm29340-201ENSMUST00000188763 3854 ntBASIC20.59■□□□□ 0.89
Usp47Q8BY87 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Prkcd-207ENSMUST00000112210 2777 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Gm15653-201ENSMUST00000119247 907 ntBASIC20.59■□□□□ 0.89
Usp47Q8BY87 Atcayos-202ENSMUST00000129950 1117 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC20.59■□□□□ 0.89
Usp47Q8BY87 1010001B22Rik-201ENSMUST00000181488 589 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Gm26808-201ENSMUST00000181569 411 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Usp47Q8BY87 Serhl-201ENSMUST00000078218 1371 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp47Q8BY87 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
Usp47Q8BY87 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp47Q8BY87 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp47Q8BY87 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Usp47Q8BY87 Tars2-204ENSMUST00000163530 2157 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms