Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 AL593843.1-201ENSMUST00000195891 145 ntBASIC20.04■□□□□ 0.8
Usp40Q8BWR4 Gm45195-201ENSMUST00000205597 1008 ntBASIC20.04■□□□□ 0.8
Usp40Q8BWR4 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 Enah-212ENSMUST00000195059 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 Mief1-202ENSMUST00000166030 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp40Q8BWR4 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Gm5763-201ENSMUST00000155951 1530 ntBASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Hcrt-202ENSMUST00000107360 509 ntTSL 5 BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Cmss1-201ENSMUST00000114371 930 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Gm7820-201ENSMUST00000121012 1052 ntBASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Tmem262-201ENSMUST00000143303 545 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Gm29542-201ENSMUST00000186876 704 ntTSL 3 BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Gm6916-202ENSMUST00000205523 195 ntBASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Uts2-201ENSMUST00000030803 538 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Mmp11-202ENSMUST00000120281 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC20.03■□□□□ 0.8
Usp40Q8BWR4 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Ado-201ENSMUST00000075686 4445 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Gm42612-201ENSMUST00000197986 623 ntBASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Gm43170-201ENSMUST00000199827 612 ntBASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Cript-201ENSMUST00000024959 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Hist1h3f-201ENSMUST00000075558 1261 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Hadh-201ENSMUST00000029610 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Cachd1-202ENSMUST00000097955 4277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Usp40Q8BWR4 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Usp40Q8BWR4 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Usp40Q8BWR4 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Usp40Q8BWR4 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Usp40Q8BWR4 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Usp40Q8BWR4 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Usp40Q8BWR4 Stk40-201ENSMUST00000094761 3492 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Crat-202ENSMUST00000102854 2160 ntTSL 5 BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 AC121598.1-201ENSMUST00000228224 1019 ntBASIC20.01■□□□□ 0.79
Usp40Q8BWR4 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Rps3-201ENSMUST00000032998 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Mthfsd-202ENSMUST00000116415 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Cant1-202ENSMUST00000092378 2995 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp40Q8BWR4 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp40Q8BWR4 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp40Q8BWR4 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC20■□□□□ 0.79
Usp40Q8BWR4 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp40Q8BWR4 Gm14042-201ENSMUST00000120139 833 ntBASIC20■□□□□ 0.79
Usp40Q8BWR4 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC20■□□□□ 0.79
Usp40Q8BWR4 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC20■□□□□ 0.79
Usp40Q8BWR4 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Usp40Q8BWR4 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp40Q8BWR4 Mobp-207ENSMUST00000215512 498 ntTSL 2 BASIC20■□□□□ 0.79
Usp40Q8BWR4 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp40Q8BWR4 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC20■□□□□ 0.79
Usp40Q8BWR4 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms