Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Oprl1-203ENSMUST00000108766 1241 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Gm14127-201ENSMUST00000117906 678 ntBASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Gm23984-201ENSMUST00000157139 203 ntBASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 AA619741-201ENSMUST00000195095 646 ntBASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 AC132467.2-202ENSMUST00000227726 559 ntBASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Gm15163-201ENSMUST00000120749 1302 ntBASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Fgfr2-215ENSMUST00000122054 3323 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
Upf3aQ3ULJ3 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Pdk1-201ENSMUST00000006669 5185 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Gm6912-201ENSMUST00000117218 544 ntBASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Gm29585-201ENSMUST00000185270 514 ntTSL 5 BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Ighv5-13-201ENSMUST00000193550 290 ntBASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Agrp-202ENSMUST00000194091 734 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Gm18187-201ENSMUST00000196476 984 ntBASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 AC130829.1-201ENSMUST00000221548 494 ntBASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Hist1h2aa-201ENSMUST00000072391 390 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Gm37812-201ENSMUST00000195216 2475 ntBASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Ovca2-201ENSMUST00000071562 2670 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Anks1b-214ENSMUST00000182356 7561 ntTSL 5 BASIC15.37■□□□□ 0.05
Upf3aQ3ULJ3 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 4932443L11Rik-201ENSMUST00000148353 414 ntTSL 5 BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Alms1-ps2-201ENSMUST00000160606 1170 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Ilkap-208ENSMUST00000187306 377 ntTSL 5 BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Gm18018-201ENSMUST00000198273 408 ntBASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Gm45668-201ENSMUST00000211271 493 ntBASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 AC121804.3-201ENSMUST00000223420 295 ntBASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Tgif2-ps2-201ENSMUST00000061746 711 ntBASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Pde4d-207ENSMUST00000120664 4207 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Gm45751-201ENSMUST00000210185 1573 ntBASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
Upf3aQ3ULJ3 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Gm15939-201ENSMUST00000160756 2147 ntTSL 5 BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Lrriq3-201ENSMUST00000029833 2652 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Zfp995-205ENSMUST00000190066 2221 ntAPPRIS P1 TSL 2 BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Spaca3-202ENSMUST00000103223 947 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
Upf3aQ3ULJ3 Ube2j2-206ENSMUST00000118192 922 ntTSL 5 BASIC15.35■□□□□ 0.05
Retrieved 100 of 76,532 protein–RNA pairs in 40 ms