Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp39Q3TIX9 Gm45683-201ENSMUST00000210825 1247 ntBASIC14.23□□□□□ -0.13
Usp39Q3TIX9 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp39Q3TIX9 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Usp39Q3TIX9 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC14.23□□□□□ -0.13
Usp39Q3TIX9 Pigv-201ENSMUST00000062118 3979 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp39Q3TIX9 Gspt2-201ENSMUST00000096368 2491 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Usp39Q3TIX9 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Usp39Q3TIX9 AC130669.1-201ENSMUST00000228537 1672 ntBASIC14.23□□□□□ -0.13
Usp39Q3TIX9 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp39Q3TIX9 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Usp39Q3TIX9 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Ksr1-207ENSMUST00000226282 5260 ntBASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Tmbim6-201ENSMUST00000023749 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Spag1-202ENSMUST00000171205 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Gm12008-201ENSMUST00000117791 755 ntBASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Foxa1-201ENSMUST00000044380 3191 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Pex5-201ENSMUST00000035861 3139 ntAPPRIS P4 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Lamb2-201ENSMUST00000065014 5629 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Gm37912-201ENSMUST00000191895 3076 ntBASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Usp39Q3TIX9 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Cyp2f2-201ENSMUST00000003100 1866 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Qsox1-207ENSMUST00000194632 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Rnd1-201ENSMUST00000003451 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Cers5-202ENSMUST00000109035 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Gm43697-201ENSMUST00000199637 2581 ntBASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 AC225888.1-201ENSMUST00000227184 728 ntBASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Hgfac-201ENSMUST00000030985 2135 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Usp39Q3TIX9 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Usp39Q3TIX9 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
Usp39Q3TIX9 Slc46a3-201ENSMUST00000031655 2434 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Usp39Q3TIX9 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
Usp39Q3TIX9 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Usp39Q3TIX9 Best4-ps-201ENSMUST00000129783 1380 ntBASIC14.21□□□□□ -0.14
Usp39Q3TIX9 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Usp39Q3TIX9 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Chml-201ENSMUST00000104984 6905 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Chml-202ENSMUST00000209720 6905 ntTSL 5 BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Tpr-203ENSMUST00000124973 7430 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Entpd5-204ENSMUST00000117286 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Gm13036-201ENSMUST00000117799 748 ntBASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Gm14494-201ENSMUST00000118786 435 ntBASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Gm9727-201ENSMUST00000161387 555 ntBASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Gm45167-201ENSMUST00000208007 322 ntBASIC14.2□□□□□ -0.14
Usp39Q3TIX9 Gm7787-201ENSMUST00000216858 688 ntBASIC14.2□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms