Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ptchd3Q0EEE2 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ptchd3Q0EEE2 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Ptchd3Q0EEE2 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ptchd3Q0EEE2 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ptchd3Q0EEE2 Setd1b-204ENSMUST00000163030 8857 ntAPPRIS P2 TSL 5 BASIC14.2□□□□□ -0.14
Ptchd3Q0EEE2 Odf2-203ENSMUST00000113755 2305 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ptchd3Q0EEE2 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC14.2□□□□□ -0.14
Ptchd3Q0EEE2 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ptchd3Q0EEE2 Pld3-201ENSMUST00000117095 2282 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ptchd3Q0EEE2 Plekha1-201ENSMUST00000048180 3321 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Ptchd3Q0EEE2 Osbpl8-201ENSMUST00000095310 3622 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ptchd3Q0EEE2 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ptchd3Q0EEE2 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Me1-201ENSMUST00000034989 3288 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Asb16-201ENSMUST00000036467 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Hnrnpr-204ENSMUST00000131671 2543 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Nr2e3-201ENSMUST00000034831 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Mapk8-201ENSMUST00000022504 2587 ntAPPRIS P5 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Gm13418-201ENSMUST00000119097 944 ntBASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 AC093926.2-201ENSMUST00000214468 1228 ntBASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 AC158538.2-201ENSMUST00000225455 906 ntBASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Ffar2-202ENSMUST00000163504 1913 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Olfr683-202ENSMUST00000209879 3841 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Trim27-201ENSMUST00000021761 4204 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Rest-202ENSMUST00000113449 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Pcdha11-201ENSMUST00000115658 5359 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Fbxo41-202ENSMUST00000161078 6562 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Ptchd3Q0EEE2 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Fbln7-201ENSMUST00000028864 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Gm43056-201ENSMUST00000197865 2791 ntBASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Pigg-201ENSMUST00000031189 3427 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Snrpn-202ENSMUST00000098402 2076 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Gm44645-201ENSMUST00000205492 1653 ntBASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Grin3a-201ENSMUST00000076674 7431 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Gm7153-201ENSMUST00000117092 455 ntBASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Gm11780-201ENSMUST00000136880 516 ntBASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Vopp1-202ENSMUST00000127485 2908 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Gng4-201ENSMUST00000021734 3179 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Fbxl4-201ENSMUST00000039234 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Matn2-206ENSMUST00000228570 2798 ntBASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Rab11fip2-201ENSMUST00000051996 4482 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Ptchd3Q0EEE2 1810008I18Rik-201ENSMUST00000185464 2419 ntBASIC14.17□□□□□ -0.14
Ptchd3Q0EEE2 Wnt3a-201ENSMUST00000010044 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ptchd3Q0EEE2 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Ptchd3Q0EEE2 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
Ptchd3Q0EEE2 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ptchd3Q0EEE2 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ptchd3Q0EEE2 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ptchd3Q0EEE2 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Ptchd3Q0EEE2 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ptchd3Q0EEE2 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ptchd3Q0EEE2 Il2rb-202ENSMUST00000163494 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ptchd3Q0EEE2 Tle3-210ENSMUST00000161207 2592 ntTSL 5 BASIC14.17□□□□□ -0.14
Ptchd3Q0EEE2 4732463B04Rik-201ENSMUST00000180751 2932 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Ptchd3Q0EEE2 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
Ptchd3Q0EEE2 Dpp3-201ENSMUST00000025851 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ptchd3Q0EEE2 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Ptchd3Q0EEE2 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms