Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Zscan12-202ENSMUST00000099720 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Rfx1P48377 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
Rfx1P48377 Pxn-213ENSMUST00000202564 2126 ntTSL 5 BASIC17.56■□□□□ 0.4
Rfx1P48377 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Ank1-208ENSMUST00000121075 1740 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Rfx1P48377 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC17.55■□□□□ 0.4
Rfx1P48377 Cnih4-203ENSMUST00000111059 3127 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC17.55■□□□□ 0.4
Rfx1P48377 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Cadps2-213ENSMUST00000166458 4598 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Rfx1P48377 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Gm27357-201ENSMUST00000183754 135 ntBASIC17.55■□□□□ 0.4
Rfx1P48377 Dusp13-213ENSMUST00000184703 902 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
Rfx1P48377 AC158538.1-201ENSMUST00000225870 294 ntBASIC17.55■□□□□ 0.4
Rfx1P48377 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Tsc2-205ENSMUST00000226398 5459 ntAPPRIS P2 BASIC17.55■□□□□ 0.4
Rfx1P48377 Gm26882-201ENSMUST00000181611 1537 ntTSL 5 BASIC17.55■□□□□ 0.4
Rfx1P48377 Kif7-203ENSMUST00000183846 4577 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Rfx1P48377 Tub-202ENSMUST00000119474 2097 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Mob3c-201ENSMUST00000030477 2884 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Dmkn-204ENSMUST00000085691 2007 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Gm26852-201ENSMUST00000180691 5751 ntTSL 5 BASIC17.55■□□□□ 0.4
Rfx1P48377 Ablim1-209ENSMUST00000111546 2267 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Rfx1P48377 Slc5a2-202ENSMUST00000118169 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Rfx1P48377 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Rfx1P48377 Slc5a6-202ENSMUST00000114668 3436 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Fh1-201ENSMUST00000027810 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Rundc1-201ENSMUST00000040561 3223 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Actr1b-201ENSMUST00000043951 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC17.54■□□□□ 0.4
Rfx1P48377 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC17.54■□□□□ 0.4
Rfx1P48377 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
Rfx1P48377 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC17.54■□□□□ 0.4
Rfx1P48377 Rbfox2-207ENSMUST00000227533 1041 ntBASIC17.54■□□□□ 0.4
Rfx1P48377 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Kif3c-205ENSMUST00000220210 4144 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Myo19-202ENSMUST00000093969 4091 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Rfx1P48377 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rfx1P48377 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx1P48377 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC17.53■□□□□ 0.4
Rfx1P48377 Cdkn2aip-201ENSMUST00000038738 3464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx1P48377 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx1P48377 Slco3a1-203ENSMUST00000107453 3793 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx1P48377 Sgce-202ENSMUST00000090686 1547 ntTSL 5 BASIC17.53■□□□□ 0.4
Rfx1P48377 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx1P48377 Apbb1-215ENSMUST00000190369 1882 ntTSL 5 BASIC17.53■□□□□ 0.4
Rfx1P48377 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC17.53■□□□□ 0.4
Rfx1P48377 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Rfx1P48377 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx1P48377 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx1P48377 Ptprcap-201ENSMUST00000061086 927 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx1P48377 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx1P48377 Msh2-201ENSMUST00000024967 3283 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx1P48377 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx1P48377 Clic6-201ENSMUST00000023670 3758 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rfx1P48377 Zbtb46-201ENSMUST00000029106 5309 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
Rfx1P48377 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Rfx1P48377 Tjap1-211ENSMUST00000225080 2412 ntAPPRIS P2 BASIC17.52■□□□□ 0.4
Rfx1P48377 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx1P48377 Ate1-201ENSMUST00000033139 4735 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx1P48377 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx1P48377 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx1P48377 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx1P48377 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC17.52■□□□□ 0.4
Rfx1P48377 Gpr45-203ENSMUST00000179766 3776 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx1P48377 Nsd3-204ENSMUST00000139966 5261 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Rfx1P48377 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx1P48377 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx1P48377 Gm2308-201ENSMUST00000166539 1004 ntBASIC17.52■□□□□ 0.4
Rfx1P48377 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx1P48377 Gm30238-201ENSMUST00000195528 2603 ntBASIC17.52■□□□□ 0.4
Rfx1P48377 4632404H12Rik-201ENSMUST00000038450 2791 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx1P48377 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx1P48377 Pglyrp2-201ENSMUST00000114455 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rfx1P48377 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC17.52■□□□□ 0.39
Rfx1P48377 P2ry2-201ENSMUST00000037540 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 25.5 ms