Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Shmt1P50431 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Shmt1P50431 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Shmt1P50431 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Shmt1P50431 Plekha8-202ENSMUST00000119706 6739 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
Shmt1P50431 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Hnrnpa2b1-210ENSMUST00000204188 1518 ntTSL 5 BASIC15.53■□□□□ 0.08
Shmt1P50431 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Gm9867-201ENSMUST00000192212 2647 ntBASIC15.53■□□□□ 0.08
Shmt1P50431 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Rab3a-204ENSMUST00000110093 1442 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Rxra-202ENSMUST00000100251 1952 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
Shmt1P50431 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 AA543401-201ENSMUST00000164248 1269 ntBASIC15.53■□□□□ 0.08
Shmt1P50431 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC15.53■□□□□ 0.08
Shmt1P50431 Cdk2ap2-204ENSMUST00000174514 669 ntTSL 2 BASIC15.53■□□□□ 0.08
Shmt1P50431 Gm28277-201ENSMUST00000187450 885 ntTSL 3 BASIC15.53■□□□□ 0.08
Shmt1P50431 Gm29541-201ENSMUST00000191351 678 ntBASIC15.53■□□□□ 0.08
Shmt1P50431 Gm42854-201ENSMUST00000201262 722 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC15.53■□□□□ 0.08
Shmt1P50431 Prg3-201ENSMUST00000028466 949 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Commd9-201ENSMUST00000028584 1191 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Gm37728-201ENSMUST00000195025 2292 ntBASIC15.53■□□□□ 0.08
Shmt1P50431 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Gm6756-201ENSMUST00000180647 1620 ntBASIC15.53■□□□□ 0.08
Shmt1P50431 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC15.53■□□□□ 0.08
Shmt1P50431 Sec14l1-201ENSMUST00000021177 2866 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Shmt1P50431 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Shmt1P50431 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Shmt1P50431 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Shmt1P50431 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Shmt1P50431 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Shmt1P50431 Ap4b1-207ENSMUST00000200377 1823 ntTSL 5 BASIC15.52■□□□□ 0.08
Shmt1P50431 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Shmt1P50431 Actn3-201ENSMUST00000006626 2880 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Shmt1P50431 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Shmt1P50431 Kdr-201ENSMUST00000113516 5924 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Shmt1P50431 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
Shmt1P50431 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Shmt1P50431 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Shmt1P50431 Hagh-202ENSMUST00000118788 1191 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
Shmt1P50431 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Shmt1P50431 Gm24158-201ENSMUST00000175263 71 ntBASIC15.52■□□□□ 0.08
Shmt1P50431 Gm6944-201ENSMUST00000182449 1006 ntBASIC15.52■□□□□ 0.08
Shmt1P50431 Gm7774-201ENSMUST00000200064 533 ntBASIC15.52■□□□□ 0.08
Shmt1P50431 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC15.52■□□□□ 0.08
Shmt1P50431 Gm45098-201ENSMUST00000207179 657 ntBASIC15.52■□□□□ 0.08
Shmt1P50431 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Shmt1P50431 Il31-201ENSMUST00000031389 806 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Shmt1P50431 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC15.52■□□□□ 0.08
Shmt1P50431 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Shmt1P50431 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Shmt1P50431 Cyp2t4-201ENSMUST00000108385 1599 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
Shmt1P50431 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.07
Shmt1P50431 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Shmt1P50431 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Shmt1P50431 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
Shmt1P50431 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Shmt1P50431 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Shmt1P50431 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Shmt1P50431 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Shmt1P50431 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Shmt1P50431 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Shmt1P50431 Lap3-201ENSMUST00000046122 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Shmt1P50431 Ehd4-201ENSMUST00000028755 3730 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Shmt1P50431 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Shmt1P50431 Fgf17-202ENSMUST00000227123 1336 ntBASIC15.51■□□□□ 0.07
Shmt1P50431 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Shmt1P50431 Gm14057-201ENSMUST00000120631 482 ntBASIC15.51■□□□□ 0.07
Shmt1P50431 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Shmt1P50431 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC15.51■□□□□ 0.07
Shmt1P50431 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Shmt1P50431 Gm8116-201ENSMUST00000182917 1201 ntBASIC15.51■□□□□ 0.07
Shmt1P50431 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Shmt1P50431 Gm10253-201ENSMUST00000194270 940 ntBASIC15.51■□□□□ 0.07
Shmt1P50431 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Shmt1P50431 AC158529.1-201ENSMUST00000223618 239 ntBASIC15.51■□□□□ 0.07
Shmt1P50431 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Shmt1P50431 Evpl-201ENSMUST00000037007 6384 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
Shmt1P50431 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Shmt1P50431 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Shmt1P50431 Pcsk4-201ENSMUST00000020340 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Shmt1P50431 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 29 ms