Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd3B1AR17 Tdrd5-201ENSMUST00000121146 3759 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd3B1AR17 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd3B1AR17 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd3B1AR17 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
Chd3B1AR17 Trnt1-203ENSMUST00000113248 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd3B1AR17 Elovl1-207ENSMUST00000167636 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Chd3B1AR17 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Chd3B1AR17 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
Chd3B1AR17 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC14.38□□□□□ -0.11
Chd3B1AR17 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
Chd3B1AR17 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
Chd3B1AR17 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Farp2-202ENSMUST00000122402 2816 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Rnf139-201ENSMUST00000036904 4348 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Pdia2-201ENSMUST00000039113 1721 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC14.38□□□□□ -0.11
Chd3B1AR17 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC14.38□□□□□ -0.11
Chd3B1AR17 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Krt18-201ENSMUST00000023803 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Chd3B1AR17 Gm10044-201ENSMUST00000081331 1312 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 Gm15701-201ENSMUST00000129559 573 ntTSL 3 BASIC14.37□□□□□ -0.11
Chd3B1AR17 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC14.37□□□□□ -0.11
Chd3B1AR17 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC14.37□□□□□ -0.11
Chd3B1AR17 Gm9824-201ENSMUST00000178707 561 ntBASIC14.37□□□□□ -0.11
Chd3B1AR17 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 Apobec2-201ENSMUST00000046549 1218 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 Rpl10-ps2-201ENSMUST00000098432 645 ntBASIC14.37□□□□□ -0.11
Chd3B1AR17 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Chd3B1AR17 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 Ubl4b-201ENSMUST00000052853 1387 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
Chd3B1AR17 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC14.37□□□□□ -0.11
Chd3B1AR17 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC14.37□□□□□ -0.11
Chd3B1AR17 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC14.37□□□□□ -0.11
Chd3B1AR17 Lcn6-202ENSMUST00000114197 635 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 CT025535.1-201ENSMUST00000227172 491 ntBASIC14.37□□□□□ -0.11
Chd3B1AR17 Smdt1-201ENSMUST00000023086 705 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 Gm2423-201ENSMUST00000074863 733 ntBASIC14.37□□□□□ -0.11
Chd3B1AR17 Gm13613-201ENSMUST00000126240 1444 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Chd3B1AR17 Slc25a34-201ENSMUST00000038661 2670 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Chd3B1AR17 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Map6-203ENSMUST00000122101 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 BC001981-202ENSMUST00000191393 1545 ntBASIC14.36□□□□□ -0.11
Chd3B1AR17 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC14.36□□□□□ -0.11
Chd3B1AR17 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC14.36□□□□□ -0.11
Chd3B1AR17 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Ppp4r4-201ENSMUST00000021631 3964 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 AA619741-201ENSMUST00000195095 646 ntBASIC14.36□□□□□ -0.11
Chd3B1AR17 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 CT010478.1-201ENSMUST00000220747 2787 ntBASIC14.36□□□□□ -0.11
Chd3B1AR17 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC14.36□□□□□ -0.11
Chd3B1AR17 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
Chd3B1AR17 AC159621.2-201ENSMUST00000223519 1326 ntBASIC14.36□□□□□ -0.11
Chd3B1AR17 Tmem204-201ENSMUST00000024984 1846 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Chd3B1AR17 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Chd3B1AR17 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Chd3B1AR17 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Chd3B1AR17 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Chd3B1AR17 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 44.3 ms