Protein–RNA interactions for Protein: Q9DCN7

Rnft1, E3 ubiquitin-protein ligase RNFT1, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnft1Q9DCN7 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnft1Q9DCN7 Tspan15-201ENSMUST00000047883 3638 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnft1Q9DCN7 Efs-201ENSMUST00000022813 2705 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
Rnft1Q9DCN7 Fam19a4-201ENSMUST00000089295 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 4932422M17Rik-201ENSMUST00000195992 2639 ntBASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Rusc1-202ENSMUST00000090929 3706 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Gm13418-201ENSMUST00000119097 944 ntBASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 AC159301.1-201ENSMUST00000225130 1182 ntBASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Atp6v0c-202ENSMUST00000098862 796 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Npnt-204ENSMUST00000117164 1779 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Trim32-201ENSMUST00000050850 3194 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Dmtn-202ENSMUST00000022695 4080 ntTSL 5 BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Mcc-202ENSMUST00000164666 3606 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 9930104L06Rik-201ENSMUST00000094769 2911 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Pomgnt1-202ENSMUST00000106496 2613 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 H13-202ENSMUST00000089059 1743 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Gm3928-201ENSMUST00000121141 1307 ntBASIC14.41□□□□□ -0.1
Rnft1Q9DCN7 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Tuft1-203ENSMUST00000196655 2156 ntTSL 5 BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Gpr88-201ENSMUST00000090473 3469 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Gm10010-201ENSMUST00000071101 2346 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Lysmd3-202ENSMUST00000224300 4250 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Lzts1-201ENSMUST00000037049 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Fam53b-203ENSMUST00000097999 5465 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Rabggta-202ENSMUST00000163889 1886 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
Rnft1Q9DCN7 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Lrch4-202ENSMUST00000175968 2036 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Rcn3-201ENSMUST00000019683 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Slc25a21-201ENSMUST00000044634 2609 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Cyp2u1-201ENSMUST00000106337 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Nyap1-201ENSMUST00000061789 3912 ntAPPRIS P3 TSL 5 BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Grm7-201ENSMUST00000071076 3127 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Prdm10-202ENSMUST00000117389 1952 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Gdap1l1-201ENSMUST00000018087 2220 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 4921513I03Rik-201ENSMUST00000056994 1534 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Nop53-201ENSMUST00000044158 3176 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Atp2b3-202ENSMUST00000088429 4483 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Rnft1Q9DCN7 Zkscan4-201ENSMUST00000062609 2400 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
Retrieved 100 of 76,532 protein–RNA pairs in 73.5 ms