Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Rbpms2-202ENSMUST00000169003 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Vps28Q9D1C8 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Cyb561a3-201ENSMUST00000168445 1474 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Gm16425-201ENSMUST00000118143 3130 ntBASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Igf2-203ENSMUST00000105935 650 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Gm18889-201ENSMUST00000174284 929 ntBASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Gm44335-201ENSMUST00000196879 141 ntBASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Gm44297-201ENSMUST00000198304 141 ntBASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Gm44346-201ENSMUST00000198851 141 ntBASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Rab33a-201ENSMUST00000033430 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 P2rx3-203ENSMUST00000111616 1315 ntTSL 5 BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Pik3c2b-201ENSMUST00000077730 7928 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Vps28Q9D1C8 Wdr90-201ENSMUST00000079461 5991 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0.01
Vps28Q9D1C8 Kif1c-203ENSMUST00000102554 6684 ntAPPRIS P2 TSL 5 BASIC15.08■□□□□ 0.01
Vps28Q9D1C8 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
Vps28Q9D1C8 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Vps28Q9D1C8 Mdm1-202ENSMUST00000163238 2461 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Vps28Q9D1C8 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Vps28Q9D1C8 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Vps28Q9D1C8 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Vps28Q9D1C8 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Vps28Q9D1C8 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
Vps28Q9D1C8 Ntng2-204ENSMUST00000102873 1593 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Vps28Q9D1C8 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Vps28Q9D1C8 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Vps28Q9D1C8 Pex3-202ENSMUST00000105539 1961 ntTSL 1 (best) BASIC15.08■□□□□ 0
Vps28Q9D1C8 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC15.08■□□□□ 0
Vps28Q9D1C8 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC15.08■□□□□ 0
Vps28Q9D1C8 Gm14701-201ENSMUST00000117156 348 ntBASIC15.08■□□□□ 0
Vps28Q9D1C8 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC15.08■□□□□ 0
Vps28Q9D1C8 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC15.08■□□□□ 0
Vps28Q9D1C8 Gm18057-201ENSMUST00000208220 503 ntBASIC15.08■□□□□ 0
Vps28Q9D1C8 Nmur1-202ENSMUST00000212058 1287 ntAPPRIS P3 TSL 5 BASIC15.08■□□□□ 0
Vps28Q9D1C8 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC15.08■□□□□ 0
Vps28Q9D1C8 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC15.08■□□□□ 0
Vps28Q9D1C8 Dnal1-201ENSMUST00000046340 790 ntTSL 1 (best) BASIC15.08■□□□□ 0
Vps28Q9D1C8 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC15.08■□□□□ 0
Vps28Q9D1C8 Erich4-201ENSMUST00000098663 911 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Vps28Q9D1C8 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC15.08■□□□□ 0
Vps28Q9D1C8 Arhgef1-218ENSMUST00000206508 3195 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Vps28Q9D1C8 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Vps28Q9D1C8 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC15.08■□□□□ 0
Vps28Q9D1C8 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Vps28Q9D1C8 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Vps28Q9D1C8 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Vps28Q9D1C8 Ttc22-201ENSMUST00000047922 2554 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Vps28Q9D1C8 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Vps28Q9D1C8 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Vps28Q9D1C8 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Smyd5-201ENSMUST00000045693 2486 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Vps28Q9D1C8 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Vps28Q9D1C8 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC15.07■□□□□ 0
Vps28Q9D1C8 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC15.07■□□□□ 0
Vps28Q9D1C8 Gm6973-201ENSMUST00000117080 721 ntBASIC15.07■□□□□ 0
Vps28Q9D1C8 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
Vps28Q9D1C8 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC15.07■□□□□ 0
Vps28Q9D1C8 Gm17455-201ENSMUST00000164428 855 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
Vps28Q9D1C8 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC15.07■□□□□ 0
Vps28Q9D1C8 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC15.07■□□□□ 0
Vps28Q9D1C8 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC15.07■□□□□ 0
Vps28Q9D1C8 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Gm10313-201ENSMUST00000095320 1002 ntBASIC15.07■□□□□ 0
Vps28Q9D1C8 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
Vps28Q9D1C8 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Vps28Q9D1C8 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Vps28Q9D1C8 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
Vps28Q9D1C8 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC15.07■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms