Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Gm27646-201ENSMUST00000183989 110 ntBASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Gm29629-201ENSMUST00000187926 386 ntTSL 3 BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Arhgap4-204ENSMUST00000114406 2749 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Edem3-203ENSMUST00000188145 3262 ntTSL 5 BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Olfr718-ps1-202ENSMUST00000213631 4737 ntAPPRIS P5 TSL 5 BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Lrp10-201ENSMUST00000022782 4228 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Gm11839-201ENSMUST00000120647 1953 ntBASIC13.82□□□□□ -0.2
Ddx28Q9CWT6 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Capn1-201ENSMUST00000025891 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Psmc4-206ENSMUST00000140053 1244 ntTSL 5 BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Gm5864-201ENSMUST00000202263 970 ntBASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Gm6296-201ENSMUST00000222599 943 ntBASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Ifi27-204ENSMUST00000079294 963 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Amotl2-201ENSMUST00000035121 4328 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Syngap1-201ENSMUST00000081285 4315 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Mfrp-202ENSMUST00000161381 4254 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ddx28Q9CWT6 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Gm15512-201ENSMUST00000137359 2257 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Tcf12-202ENSMUST00000183404 6299 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Tet3-203ENSMUST00000186548 5944 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Papd5-201ENSMUST00000066748 4489 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Fut7-202ENSMUST00000100320 2076 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Mir8098-201ENSMUST00000184011 137 ntBASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Gm7556-201ENSMUST00000201178 1084 ntBASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Znrf1-203ENSMUST00000168428 4451 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Rnf144a-201ENSMUST00000020971 5164 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ddx28Q9CWT6 Ctnnb1-201ENSMUST00000007130 3623 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx28Q9CWT6 Kcnk16-202ENSMUST00000225596 2127 ntBASIC13.79□□□□□ -0.2
Ddx28Q9CWT6 Catip-201ENSMUST00000097697 2101 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx28Q9CWT6 Rusc1-201ENSMUST00000052539 3316 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ddx28Q9CWT6 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 44.4 ms