Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Cage1-202ENSMUST00000089840 3449 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Smc1aQ9CU62 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Sema4c-201ENSMUST00000114991 3773 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Efnb1-201ENSMUST00000052839 3258 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Gm16151-201ENSMUST00000129696 639 ntTSL 3 BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Ccno-201ENSMUST00000038404 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Arl5c-201ENSMUST00000042971 1571 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Ncs1-201ENSMUST00000000199 4653 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Abi2-206ENSMUST00000188594 1658 ntTSL 5 BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Hps1-204ENSMUST00000160455 2952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Ids-201ENSMUST00000101509 4972 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Klhl11-201ENSMUST00000056665 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Smc1aQ9CU62 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Cbarp-215ENSMUST00000170219 2941 ntAPPRIS P2 TSL 5 BASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Gm6257-201ENSMUST00000163864 910 ntBASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Gm18489-201ENSMUST00000172565 551 ntBASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Gm9682-201ENSMUST00000197505 556 ntBASIC16.48■□□□□ 0.23
Smc1aQ9CU62 AC124549.3-201ENSMUST00000225541 367 ntBASIC16.48■□□□□ 0.23
Smc1aQ9CU62 AC151836.1-202ENSMUST00000226259 753 ntBASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Smc1aQ9CU62 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Smc1aQ9CU62 Fam174a-202ENSMUST00000186780 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 Depdc1b-201ENSMUST00000051594 2563 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 Glyr1-202ENSMUST00000115844 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 Glyr1-201ENSMUST00000023189 3330 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 Pex12-202ENSMUST00000108146 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 2310001H17Rik-206ENSMUST00000205051 676 ntTSL 3 BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 Gm19164-201ENSMUST00000210667 640 ntBASIC16.47■□□□□ 0.23
Smc1aQ9CU62 AC147366.1-201ENSMUST00000227671 852 ntBASIC16.47■□□□□ 0.23
Smc1aQ9CU62 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 Zfp606-201ENSMUST00000098822 4748 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 Sowaha-201ENSMUST00000104955 3702 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
Smc1aQ9CU62 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Smc1aQ9CU62 Med15-201ENSMUST00000012259 3383 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.23
Smc1aQ9CU62 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC16.46■□□□□ 0.23
Smc1aQ9CU62 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Smc1aQ9CU62 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Smc1aQ9CU62 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Smc1aQ9CU62 Itga3-201ENSMUST00000001548 4861 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Smc1aQ9CU62 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Smc1aQ9CU62 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Smc1aQ9CU62 Tcf19-202ENSMUST00000160885 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Smc1aQ9CU62 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
Smc1aQ9CU62 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Smc1aQ9CU62 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Smc1aQ9CU62 Gm44492-201ENSMUST00000197012 141 ntBASIC16.46■□□□□ 0.23
Smc1aQ9CU62 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC16.46■□□□□ 0.23
Smc1aQ9CU62 Nxnl2-201ENSMUST00000021828 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Smc1aQ9CU62 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Smc1aQ9CU62 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC16.46■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 39.8 ms