Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC14.36□□□□□ -0.11
Msh4Q99MT2 AC225888.1-201ENSMUST00000227184 728 ntBASIC14.36□□□□□ -0.11
Msh4Q99MT2 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Cidea-201ENSMUST00000025404 1164 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Chchd6-201ENSMUST00000032172 1121 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Robo4-205ENSMUST00000214185 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Hmga2-201ENSMUST00000072777 3710 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Eif5-201ENSMUST00000050993 1969 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Klhl33-204ENSMUST00000227271 5513 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msh4Q99MT2 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Lmntd2-202ENSMUST00000170841 2077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Armc9-205ENSMUST00000131412 2160 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Aimp2-202ENSMUST00000100483 1073 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Siva1-202ENSMUST00000109755 333 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Gm25911-201ENSMUST00000157621 56 ntBASIC14.35□□□□□ -0.11
Msh4Q99MT2 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Aimp2-201ENSMUST00000031613 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Dusp15-203ENSMUST00000123121 2993 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Ccna2-201ENSMUST00000029270 2965 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msh4Q99MT2 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Mark2-209ENSMUST00000165965 2874 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Gm7556-201ENSMUST00000201178 1084 ntBASIC14.34□□□□□ -0.11
Msh4Q99MT2 AC154572.2-201ENSMUST00000225105 997 ntBASIC14.34□□□□□ -0.11
Msh4Q99MT2 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Wdtc1-202ENSMUST00000105906 4057 ntTSL 5 BASIC14.34□□□□□ -0.11
Msh4Q99MT2 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Plod2-203ENSMUST00000160359 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Tpbg-202ENSMUST00000098500 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Kif11-201ENSMUST00000012587 4819 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Pcdh10-204ENSMUST00000193252 4638 ntAPPRIS ALT2 BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Msh4Q99MT2 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Msh4Q99MT2 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Kif21b-201ENSMUST00000075164 9115 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Aqp11-205ENSMUST00000206389 3737 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Zbtb7b-204ENSMUST00000107435 4333 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC14.33□□□□□ -0.12
Msh4Q99MT2 Gm27244-201ENSMUST00000184260 380 ntTSL 5 BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Gm27702-201ENSMUST00000184512 56 ntBASIC14.33□□□□□ -0.12
Msh4Q99MT2 Gm27397-201ENSMUST00000184997 107 ntBASIC14.33□□□□□ -0.12
Msh4Q99MT2 Gm17968-201ENSMUST00000194902 784 ntBASIC14.33□□□□□ -0.12
Msh4Q99MT2 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Bcan-201ENSMUST00000090971 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Cnksr2-202ENSMUST00000112513 4471 ntTSL 5 BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Dis3-201ENSMUST00000042471 5150 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Doc2b-201ENSMUST00000021209 4361 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msh4Q99MT2 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms