Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 Gm26840-201ENSMUST00000180784 2980 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 1700029H14Rik-204ENSMUST00000151400 1216 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 A930015D03Rik-201ENSMUST00000173900 1111 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 Gm3436-201ENSMUST00000179930 840 ntBASIC20.12■□□□□ 0.81
Usp40Q8BWR4 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Kmt5b-213ENSMUST00000176262 3933 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Lsm12-202ENSMUST00000107156 2015 ntTSL 5 BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Arfrp1-202ENSMUST00000108808 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Gm11424-201ENSMUST00000121929 829 ntBASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Gm17344-202ENSMUST00000173980 621 ntTSL 5 BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Cited1-201ENSMUST00000050551 901 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Mir125a-201ENSMUST00000083545 68 ntBASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Blzf1-202ENSMUST00000086032 1602 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Usp40Q8BWR4 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Phyhip-201ENSMUST00000003561 2838 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Dusp14-203ENSMUST00000108101 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Gm42196-201ENSMUST00000209618 730 ntTSL 5 BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 AC123645.1-201ENSMUST00000228469 605 ntBASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Hfe-201ENSMUST00000006787 516 ntTSL 5 BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Hfe-203ENSMUST00000091707 816 ntTSL 5 BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Emd-203ENSMUST00000096424 896 ntTSL 5 BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Miip-201ENSMUST00000030886 1813 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Ccdc160-201ENSMUST00000101588 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 BC001981-202ENSMUST00000191393 1545 ntBASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Wapl-201ENSMUST00000048263 6351 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Aurkc-204ENSMUST00000208049 1401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Usp40Q8BWR4 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Dnase1l2-202ENSMUST00000119932 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Dnm2-211ENSMUST00000173397 3510 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Gm45751-201ENSMUST00000210185 1573 ntBASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Zfp639-205ENSMUST00000193287 2211 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Cpsf4l-205ENSMUST00000173655 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Gm9229-201ENSMUST00000222777 126 ntBASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 AC154231.1-201ENSMUST00000220564 2175 ntBASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Ppia-206ENSMUST00000213200 1450 ntTSL 5 BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Ciart-202ENSMUST00000159739 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Arhgap40-203ENSMUST00000165398 2028 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Usp40Q8BWR4 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp40Q8BWR4 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp40Q8BWR4 Pdia2-202ENSMUST00000120333 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Usp40Q8BWR4 Taf1a-201ENSMUST00000097043 1472 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Usp40Q8BWR4 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 43.5 ms