Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Gm10961-201ENSMUST00000106703 144 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Col7a1Q63870 Gm16342-201ENSMUST00000124025 1025 ntBASIC11.92□□□□□ -0.5
Col7a1Q63870 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC11.92□□□□□ -0.5
Col7a1Q63870 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC11.92□□□□□ -0.5
Col7a1Q63870 Morn3-201ENSMUST00000031437 1128 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col7a1Q63870 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
Col7a1Q63870 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col7a1Q63870 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col7a1Q63870 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
Col7a1Q63870 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
Col7a1Q63870 Mecp2-203ENSMUST00000123362 1675 ntTSL 5 BASIC11.92□□□□□ -0.5
Col7a1Q63870 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Col7a1Q63870 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC11.91□□□□□ -0.5
Col7a1Q63870 D130052B06Rik-201ENSMUST00000101371 2295 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 Gm14028-201ENSMUST00000117434 479 ntBASIC11.91□□□□□ -0.5
Col7a1Q63870 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC11.91□□□□□ -0.5
Col7a1Q63870 Gm20426-201ENSMUST00000173657 440 ntBASIC11.91□□□□□ -0.5
Col7a1Q63870 Gm44397-201ENSMUST00000195950 113 ntBASIC11.91□□□□□ -0.5
Col7a1Q63870 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC11.91□□□□□ -0.5
Col7a1Q63870 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 Kcnip1-202ENSMUST00000101368 2322 ntTSL 2 BASIC11.91□□□□□ -0.5
Col7a1Q63870 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC11.91□□□□□ -0.5
Col7a1Q63870 Avpr2-203ENSMUST00000114395 936 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 Tmed5-203ENSMUST00000117759 482 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 Gm11439-201ENSMUST00000118598 409 ntBASIC11.91□□□□□ -0.5
Col7a1Q63870 Gm9431-201ENSMUST00000119765 1051 ntBASIC11.91□□□□□ -0.5
Col7a1Q63870 Gm44126-201ENSMUST00000204831 514 ntBASIC11.91□□□□□ -0.5
Col7a1Q63870 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 Nt5c3b-202ENSMUST00000092689 1344 ntTSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 B3gnt5-202ENSMUST00000119468 2229 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 Gm43195-201ENSMUST00000200614 2332 ntBASIC11.91□□□□□ -0.5
Col7a1Q63870 Ruvbl2-205ENSMUST00000211214 2312 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Col7a1Q63870 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col7a1Q63870 Gm17105-201ENSMUST00000163715 652 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col7a1Q63870 Gm5051-201ENSMUST00000204085 485 ntBASIC11.9□□□□□ -0.5
Col7a1Q63870 Nmnat1-201ENSMUST00000030845 1238 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col7a1Q63870 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col7a1Q63870 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col7a1Q63870 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col7a1Q63870 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col7a1Q63870 Txnrd2-215ENSMUST00000206151 2874 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.5
Col7a1Q63870 Gm12208-201ENSMUST00000122004 163 ntBASIC11.9□□□□□ -0.5
Col7a1Q63870 Gm25927-201ENSMUST00000175058 117 ntBASIC11.9□□□□□ -0.5
Col7a1Q63870 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Col7a1Q63870 Gm2260-201ENSMUST00000184965 657 ntBASIC11.9□□□□□ -0.5
Col7a1Q63870 Gm37497-201ENSMUST00000195830 798 ntBASIC11.9□□□□□ -0.5
Col7a1Q63870 Saa2-202ENSMUST00000210272 511 ntTSL 3 BASIC11.9□□□□□ -0.5
Col7a1Q63870 AC140293.1-201ENSMUST00000225626 1247 ntBASIC11.9□□□□□ -0.5
Col7a1Q63870 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col7a1Q63870 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col7a1Q63870 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col7a1Q63870 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC11.9□□□□□ -0.5
Col7a1Q63870 Sh2b3-204ENSMUST00000122426 2777 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Col7a1Q63870 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Col7a1Q63870 Mindy4-203ENSMUST00000204842 2211 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col7a1Q63870 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col7a1Q63870 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Col7a1Q63870 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.51
Col7a1Q63870 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC11.9□□□□□ -0.51
Col7a1Q63870 Gm16229-201ENSMUST00000133270 1232 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
Col7a1Q63870 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
Col7a1Q63870 Egfl7-211ENSMUST00000152988 723 ntTSL 2 BASIC11.9□□□□□ -0.51
Col7a1Q63870 Gm5069-202ENSMUST00000192714 1011 ntBASIC11.9□□□□□ -0.51
Col7a1Q63870 Tyms-ps-201ENSMUST00000219550 915 ntBASIC11.9□□□□□ -0.51
Col7a1Q63870 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
Col7a1Q63870 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC11.9□□□□□ -0.51
Col7a1Q63870 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC11.9□□□□□ -0.51
Col7a1Q63870 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Col7a1Q63870 Mettl2-201ENSMUST00000021030 1867 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 Gpr160-203ENSMUST00000108259 1916 ntAPPRIS P1 TSL 3 BASIC11.89□□□□□ -0.51
Col7a1Q63870 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 Ilf2-201ENSMUST00000001042 2027 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 Mir686-201ENSMUST00000102174 109 ntBASIC11.89□□□□□ -0.51
Col7a1Q63870 Tomm5-204ENSMUST00000107810 639 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 Gm12203-201ENSMUST00000118235 598 ntBASIC11.89□□□□□ -0.51
Col7a1Q63870 Gm12209-201ENSMUST00000120089 596 ntBASIC11.89□□□□□ -0.51
Col7a1Q63870 Gm25261-201ENSMUST00000157416 134 ntBASIC11.89□□□□□ -0.51
Col7a1Q63870 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 Pcbd1-201ENSMUST00000020298 789 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 Il27-201ENSMUST00000058429 1021 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 D1Pas1-201ENSMUST00000045108 3212 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Col7a1Q63870 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
Col7a1Q63870 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Col7a1Q63870 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC11.89□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 34.5 ms