Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Msx1P13297 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Msx1P13297 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msx1P13297 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msx1P13297 Arhgef25-201ENSMUST00000019611 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msx1P13297 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msx1P13297 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Msx1P13297 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msx1P13297 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msx1P13297 Gm13034-201ENSMUST00000121342 3177 ntBASIC13.99□□□□□ -0.17
Msx1P13297 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msx1P13297 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msx1P13297 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Msx1P13297 Kdm6a-201ENSMUST00000044484 5918 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Msx1P13297 Kdm6a-202ENSMUST00000052368 5935 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Phldb1-211ENSMUST00000135436 2844 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Msx1P13297 Gm37812-201ENSMUST00000195216 2475 ntBASIC13.98□□□□□ -0.17
Msx1P13297 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Stk40-202ENSMUST00000116286 3860 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Lyrm1-203ENSMUST00000106517 1279 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
Msx1P13297 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC13.98□□□□□ -0.17
Msx1P13297 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC13.98□□□□□ -0.17
Msx1P13297 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC13.98□□□□□ -0.17
Msx1P13297 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC13.98□□□□□ -0.17
Msx1P13297 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Msx1P13297 Gm10271-201ENSMUST00000092165 156 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Msx1P13297 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Msx1P13297 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Chd4-203ENSMUST00000112392 6652 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Msx1P13297 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Sgpp1-202ENSMUST00000220285 3200 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Ccdc181-201ENSMUST00000027867 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Msx1P13297 Phc2-201ENSMUST00000030588 3949 ntAPPRIS P3 TSL 5 BASIC13.97□□□□□ -0.17
Msx1P13297 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Fhad1-201ENSMUST00000036701 1366 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Msx1P13297 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 P2rx3-201ENSMUST00000028465 1812 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
Msx1P13297 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC13.97□□□□□ -0.17
Msx1P13297 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC13.97□□□□□ -0.17
Msx1P13297 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Msx1P13297 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Msx1P13297 Gm25287-201ENSMUST00000103846 110 ntBASIC13.97□□□□□ -0.17
Msx1P13297 Gm22918-201ENSMUST00000103855 110 ntBASIC13.97□□□□□ -0.17
Msx1P13297 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC13.97□□□□□ -0.17
Msx1P13297 B430010I23Rik-202ENSMUST00000152188 1168 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC13.97□□□□□ -0.17
Msx1P13297 Gm28237-202ENSMUST00000189477 748 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC13.97□□□□□ -0.17
Msx1P13297 AC125206.2-201ENSMUST00000217454 574 ntBASIC13.97□□□□□ -0.17
Msx1P13297 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Ankrd33b-204ENSMUST00000123325 7466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Msx1P13297 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
Msx1P13297 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC13.97□□□□□ -0.17
Msx1P13297 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Msx1P13297 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC13.97□□□□□ -0.17
Msx1P13297 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
Msx1P13297 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
Msx1P13297 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
Msx1P13297 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx1P13297 Anxa3-201ENSMUST00000031447 1595 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx1P13297 Tor1b-201ENSMUST00000028199 3039 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx1P13297 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Msx1P13297 Crem-239ENSMUST00000165086 2778 ntTSL 5 BASIC13.96□□□□□ -0.17
Msx1P13297 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
Msx1P13297 Gm6018-201ENSMUST00000216090 1306 ntBASIC13.96□□□□□ -0.17
Msx1P13297 Rps7-ps2-201ENSMUST00000219719 1347 ntBASIC13.96□□□□□ -0.17
Msx1P13297 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Msx1P13297 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
Msx1P13297 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms