Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
Hmgb3O54879 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hmgb3O54879 Gm11355-201ENSMUST00000121120 306 ntBASIC12.21□□□□□ -0.45
Hmgb3O54879 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hmgb3O54879 Gm37055-201ENSMUST00000191866 133 ntBASIC12.21□□□□□ -0.45
Hmgb3O54879 Gm45058-201ENSMUST00000205810 766 ntBASIC12.21□□□□□ -0.45
Hmgb3O54879 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Hmgb3O54879 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC12.21□□□□□ -0.45
Hmgb3O54879 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hmgb3O54879 Adam15-201ENSMUST00000029676 2975 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hmgb3O54879 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC12.21□□□□□ -0.45
Hmgb3O54879 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Hmgb3O54879 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Hmgb3O54879 Tspyl5-201ENSMUST00000042021 4010 ntAPPRIS P1 BASIC12.21□□□□□ -0.46
Hmgb3O54879 Luc7l3-209ENSMUST00000166312 5244 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Hmgb3O54879 Lipo3-201ENSMUST00000025694 2768 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Hmgb3O54879 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Hmgb3O54879 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Hmgb3O54879 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Hmgb3O54879 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Hmgb3O54879 Mfsd1-201ENSMUST00000029344 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Hmgb3O54879 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Hmgb3O54879 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC12.21□□□□□ -0.46
Hmgb3O54879 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC12.2□□□□□ -0.46
Hmgb3O54879 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC12.2□□□□□ -0.46
Hmgb3O54879 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC12.2□□□□□ -0.46
Hmgb3O54879 Pctp-201ENSMUST00000020864 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hmgb3O54879 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hmgb3O54879 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC12.2□□□□□ -0.46
Hmgb3O54879 Ccdc68-201ENSMUST00000043929 1618 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hmgb3O54879 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hmgb3O54879 Mir770-201ENSMUST00000103252 94 ntBASIC12.2□□□□□ -0.46
Hmgb3O54879 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Hmgb3O54879 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Hmgb3O54879 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Hmgb3O54879 AL672049.1-201ENSMUST00000197943 91 ntBASIC12.2□□□□□ -0.46
Hmgb3O54879 AC160980.1-201ENSMUST00000224136 970 ntBASIC12.2□□□□□ -0.46
Hmgb3O54879 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC12.2□□□□□ -0.46
Hmgb3O54879 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Hmgb3O54879 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hmgb3O54879 Mon1a-202ENSMUST00000191906 2821 ntTSL 2 BASIC12.2□□□□□ -0.46
Hmgb3O54879 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC12.2□□□□□ -0.46
Hmgb3O54879 Peg3-201ENSMUST00000051209 8694 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hmgb3O54879 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hmgb3O54879 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hmgb3O54879 Nos1ap-202ENSMUST00000160456 3022 ntAPPRIS P2 TSL 5 BASIC12.2□□□□□ -0.46
Hmgb3O54879 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC12.2□□□□□ -0.46
Hmgb3O54879 Zbtb39-201ENSMUST00000054287 5960 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hmgb3O54879 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hmgb3O54879 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Hmgb3O54879 Mfsd6l-201ENSMUST00000053211 2060 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Hmgb3O54879 Mgat3-201ENSMUST00000044970 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hmgb3O54879 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hmgb3O54879 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Hmgb3O54879 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hmgb3O54879 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Hmgb3O54879 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Hoxaas3-202ENSMUST00000136806 2207 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Eif6-202ENSMUST00000109638 1382 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Hmgb3O54879 Ripk4-201ENSMUST00000019386 3541 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Fam186a-202ENSMUST00000100209 9334 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Hmgb3O54879 Cbln4-201ENSMUST00000087950 2902 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC12.19□□□□□ -0.46
Hmgb3O54879 Csnk1g2-202ENSMUST00000085435 1825 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Ifnar2-202ENSMUST00000089042 2580 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Psma3-202ENSMUST00000160027 2846 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Hp1bp3-204ENSMUST00000105826 3348 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Hmgb3O54879 Gm11860-201ENSMUST00000122346 1010 ntBASIC12.19□□□□□ -0.46
Hmgb3O54879 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Grin2c-201ENSMUST00000003351 4279 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Hmgb3O54879 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Gm4262-201ENSMUST00000180624 1986 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC12.19□□□□□ -0.46
Hmgb3O54879 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Hmgb3O54879 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Hmgb3O54879 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Hmgb3O54879 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Hmgb3O54879 Kcnc4-201ENSMUST00000009617 3667 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 Ldha-210ENSMUST00000209984 1815 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 Mtif2-202ENSMUST00000093239 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 Gm43738-201ENSMUST00000200659 2635 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Hmgb3O54879 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Hmgb3O54879 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms