Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Ppcdc-205ENSMUST00000214144 724 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Med8-202ENSMUST00000073881 1052 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 2900055J20Rik-201ENSMUST00000096572 723 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Art3-205ENSMUST00000120193 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Gm3365-201ENSMUST00000216296 1480 ntBASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Usp40Q8BWR4 Zmym3-208ENSMUST00000121429 1890 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Usp40Q8BWR4 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usp40Q8BWR4 Cdca5-201ENSMUST00000025704 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usp40Q8BWR4 Dnajc5-202ENSMUST00000108796 934 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Usp40Q8BWR4 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Usp40Q8BWR4 Gm16091-201ENSMUST00000156664 963 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Usp40Q8BWR4 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC20.16■□□□□ 0.82
Usp40Q8BWR4 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Usp40Q8BWR4 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usp40Q8BWR4 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usp40Q8BWR4 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usp40Q8BWR4 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
Usp40Q8BWR4 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usp40Q8BWR4 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usp40Q8BWR4 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Usp40Q8BWR4 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Utp4-201ENSMUST00000047629 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Kcnip4-201ENSMUST00000087395 2366 ntTSL 5 BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Ccdc69-202ENSMUST00000108880 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 1700042O10Rik-201ENSMUST00000151032 1075 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Mir124-2hg-206ENSMUST00000189754 525 ntTSL 3 BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 9230114J08Rik-201ENSMUST00000200375 350 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 AC140375.2-201ENSMUST00000225283 584 ntBASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Tmem59l-201ENSMUST00000045286 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Acp6-201ENSMUST00000090759 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Adk-207ENSMUST00000224069 1818 ntAPPRIS ALT1 BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Arpin-201ENSMUST00000048731 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Nfyb-204ENSMUST00000130911 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Rtn1-202ENSMUST00000078505 3629 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Usp40Q8BWR4 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Usp40Q8BWR4 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Usp40Q8BWR4 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Usp40Q8BWR4 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Usp40Q8BWR4 Gm6297-201ENSMUST00000181475 2146 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Psmc3-202ENSMUST00000067663 1636 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Gtf2e2-201ENSMUST00000167264 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Fahd1-201ENSMUST00000049642 1407 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp40Q8BWR4 AC135669.1-201ENSMUST00000213585 412 ntBASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Gm6218-201ENSMUST00000219812 628 ntBASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Fam162a-201ENSMUST00000004057 635 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Gpsm1-202ENSMUST00000066936 3384 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Il18r1-203ENSMUST00000167723 1919 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Necap2-201ENSMUST00000030760 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Usp40Q8BWR4 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Rad52-201ENSMUST00000032269 1617 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Kpna4-203ENSMUST00000194558 3726 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Heyl-201ENSMUST00000040821 4537 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Cdpf1-202ENSMUST00000125947 706 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Gm10406-202ENSMUST00000170738 1955 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Usp40Q8BWR4 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 Gtf2h4-207ENSMUST00000160734 1569 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Usp40Q8BWR4 Tdrd12-205ENSMUST00000205407 1412 ntTSL 5 BASIC20.12■□□□□ 0.81
Retrieved 100 of 76,532 protein–RNA pairs in 25.4 ms