Protein–RNA interactions for Protein: Q8BL06

Usp54, Inactive ubiquitin carboxyl-terminal hydrolase 54, mousemouse

Known RBP Predictions only

Length 1,588 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp54Q8BL06 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp54Q8BL06 Mir692-1-201ENSMUST00000102263 109 ntBASIC20.67■□□□□ 0.9
Usp54Q8BL06 C430049B03Rik-201ENSMUST00000129764 868 ntTSL 3 BASIC20.67■□□□□ 0.9
Usp54Q8BL06 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Usp54Q8BL06 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Usp54Q8BL06 Gm37714-201ENSMUST00000194742 342 ntBASIC20.67■□□□□ 0.9
Usp54Q8BL06 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC20.67■□□□□ 0.9
Usp54Q8BL06 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC20.67■□□□□ 0.9
Usp54Q8BL06 AC110817.1-201ENSMUST00000225706 605 ntBASIC20.67■□□□□ 0.9
Usp54Q8BL06 Atp5h-202ENSMUST00000073791 659 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Usp54Q8BL06 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp54Q8BL06 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp54Q8BL06 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp54Q8BL06 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Usp54Q8BL06 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Usp54Q8BL06 Bckdha-201ENSMUST00000071329 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Eci2-211ENSMUST00000171229 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Nat6-201ENSMUST00000093785 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Gm11732-201ENSMUST00000151381 1742 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Fbxw17-201ENSMUST00000046974 1798 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp54Q8BL06 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Gm4804-201ENSMUST00000182234 999 ntBASIC20.66■□□□□ 0.9
Usp54Q8BL06 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC20.66■□□□□ 0.9
Usp54Q8BL06 AC155258.1-201ENSMUST00000219303 253 ntBASIC20.66■□□□□ 0.9
Usp54Q8BL06 Olfr1214-201ENSMUST00000099804 936 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Hp-201ENSMUST00000074898 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Cyp2ab1-205ENSMUST00000182741 1497 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Usp54Q8BL06 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Usp54Q8BL06 AC174678.1-201ENSMUST00000228007 2749 ntBASIC20.65■□□□□ 0.9
Usp54Q8BL06 C2cd2l-206ENSMUST00000214602 2808 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Usp54Q8BL06 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Usp54Q8BL06 Rph3al-203ENSMUST00000108420 695 ntTSL 3 BASIC20.65■□□□□ 0.9
Usp54Q8BL06 C430014B12Rik-201ENSMUST00000181720 1001 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Usp54Q8BL06 Gm44608-201ENSMUST00000206827 855 ntBASIC20.65■□□□□ 0.9
Usp54Q8BL06 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp54Q8BL06 Slc6a11-201ENSMUST00000032451 4132 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp54Q8BL06 Bdh1-202ENSMUST00000115226 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp54Q8BL06 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp54Q8BL06 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp54Q8BL06 Uhrf2-201ENSMUST00000025739 3536 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp54Q8BL06 Patz1-205ENSMUST00000110043 3702 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Usp54Q8BL06 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Usp54Q8BL06 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp54Q8BL06 Tcf3-210ENSMUST00000105346 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Usp54Q8BL06 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Usp54Q8BL06 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.9
Usp54Q8BL06 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Usp54Q8BL06 Cmc4-203ENSMUST00000149863 507 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.9
Usp54Q8BL06 Aire-216ENSMUST00000156417 1627 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Usp54Q8BL06 Gm26464-201ENSMUST00000157094 305 ntBASIC20.64■□□□□ 0.9
Usp54Q8BL06 Car7-202ENSMUST00000159416 1943 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Usp54Q8BL06 Dpy30-202ENSMUST00000164832 799 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Usp54Q8BL06 Gm8775-201ENSMUST00000170943 1327 ntBASIC20.64■□□□□ 0.9
Usp54Q8BL06 Gm19078-201ENSMUST00000206311 727 ntBASIC20.64■□□□□ 0.9
Usp54Q8BL06 AC156560.2-201ENSMUST00000221232 264 ntBASIC20.64■□□□□ 0.9
Usp54Q8BL06 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Usp54Q8BL06 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
Usp54Q8BL06 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
Usp54Q8BL06 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Usp54Q8BL06 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp54Q8BL06 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp54Q8BL06 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Usp54Q8BL06 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
Usp54Q8BL06 Cfap157-201ENSMUST00000102813 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp54Q8BL06 Tbx6-201ENSMUST00000094037 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp54Q8BL06 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp54Q8BL06 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp54Q8BL06 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Usp54Q8BL06 Trav13d-2-201ENSMUST00000103596 264 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Usp54Q8BL06 Trav13n-2-201ENSMUST00000103622 264 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Usp54Q8BL06 Gm8835-201ENSMUST00000173096 1169 ntBASIC20.63■□□□□ 0.89
Usp54Q8BL06 Pcgf1-201ENSMUST00000092614 866 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp54Q8BL06 Fam214b-204ENSMUST00000107958 3280 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp54Q8BL06 Ptbp3-205ENSMUST00000148331 2016 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Usp54Q8BL06 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp54Q8BL06 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp54Q8BL06 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp54Q8BL06 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp54Q8BL06 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp54Q8BL06 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp54Q8BL06 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Usp54Q8BL06 Gm11978-202ENSMUST00000127510 1303 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp54Q8BL06 AC114008.2-201ENSMUST00000227699 1347 ntBASIC20.63■□□□□ 0.89
Usp54Q8BL06 Samhd1-202ENSMUST00000088523 1996 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Usp54Q8BL06 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp54Q8BL06 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp54Q8BL06 Mir6420-201ENSMUST00000185032 102 ntBASIC20.63■□□□□ 0.89
Usp54Q8BL06 Gm20753-201ENSMUST00000190105 545 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Usp54Q8BL06 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms