Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Spryd3-203ENSMUST00000154032 2456 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Trim10-201ENSMUST00000060524 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Myo9b-201ENSMUST00000071935 7082 ntAPPRIS P3 TSL 5 BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Foxp2-207ENSMUST00000115477 6760 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Sema6d-208ENSMUST00000103241 6157 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Klc2-201ENSMUST00000025798 2940 ntTSL 5 BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Spon2-201ENSMUST00000046186 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Fancm-201ENSMUST00000058889 7775 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Scaf4Q6PFF0 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Asap1-216ENSMUST00000177083 4415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Gm11185-201ENSMUST00000117732 1007 ntBASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Gm13054-201ENSMUST00000154192 820 ntTSL 3 BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Gm2308-201ENSMUST00000166539 1004 ntBASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Gm37584-201ENSMUST00000193595 1290 ntBASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Mlkl-201ENSMUST00000056157 2003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Gm9918-201ENSMUST00000181801 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Rabepk-203ENSMUST00000118108 1431 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Klrg1-201ENSMUST00000032207 1414 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Aldh16a1-201ENSMUST00000107815 2685 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Phtf2-201ENSMUST00000118174 4840 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Scaf4Q6PFF0 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Skida1-201ENSMUST00000066885 2936 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Gpr137c-201ENSMUST00000146150 3917 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Cald1-201ENSMUST00000031775 2142 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Krt71-201ENSMUST00000023710 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Safb2-201ENSMUST00000075510 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Gm18489-201ENSMUST00000172565 551 ntBASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Gm27357-201ENSMUST00000183754 135 ntBASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Ly6h-207ENSMUST00000163116 2801 ntAPPRIS ALT1 TSL 2 BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Gm15850-201ENSMUST00000134998 2049 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Irf1-201ENSMUST00000019043 2069 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Pisd-201ENSMUST00000061895 2183 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Ptger1-201ENSMUST00000019608 4694 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Scaf4Q6PFF0 Slc4a2-201ENSMUST00000080067 4179 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Zfp503-201ENSMUST00000043409 4216 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Kcnq1-201ENSMUST00000009689 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Slfnl1-201ENSMUST00000062990 1762 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Tcf25-208ENSMUST00000212571 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Gm12644-201ENSMUST00000119935 606 ntBASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Rbfox2-207ENSMUST00000227533 1041 ntBASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Wdr73-201ENSMUST00000026816 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Psmb4-201ENSMUST00000005923 1183 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Mfsd3-201ENSMUST00000019224 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Cyp26b1-203ENSMUST00000204109 1340 ntTSL 5 BASIC14.55□□□□□ -0.08
Scaf4Q6PFF0 Flot1-209ENSMUST00000174080 1383 ntTSL 5 BASIC14.55□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 62.3 ms