Protein–RNA interactions for Protein: Q3TIX9

Usp39, U4/U6.U5 tri-snRNP-associated protein 2, mousemouse

Predictions only

Length 564 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp39Q3TIX9 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Fam76b-201ENSMUST00000059579 3702 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Stard5-201ENSMUST00000075418 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC14.31□□□□□ -0.12
Usp39Q3TIX9 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Gm20496-202ENSMUST00000173770 523 ntTSL 5 BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Gm5253-201ENSMUST00000187104 1025 ntBASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Gm37153-201ENSMUST00000193637 231 ntBASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Gm9682-201ENSMUST00000197505 556 ntBASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 AC151836.1-202ENSMUST00000226259 753 ntBASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Gm15590-201ENSMUST00000078419 552 ntBASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Mocs1-201ENSMUST00000024797 2646 ntTSL 5 BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Gm37500-201ENSMUST00000192059 1443 ntBASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Mcrs1-201ENSMUST00000041190 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Usp39Q3TIX9 Slc22a18-202ENSMUST00000105917 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Gm36445-203ENSMUST00000209951 1597 ntTSL 5 BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Sox21-201ENSMUST00000170662 3799 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Ap5m1-205ENSMUST00000227431 3757 ntBASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Gm42632-201ENSMUST00000201707 2411 ntBASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Cnst-201ENSMUST00000040706 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Eif4g1-203ENSMUST00000115457 5440 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Galnt14-201ENSMUST00000024858 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Gm37297-201ENSMUST00000192974 2384 ntBASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Dkk1-201ENSMUST00000025803 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Usp39Q3TIX9 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Usp39Q3TIX9 Chd1-202ENSMUST00000024627 7916 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp39Q3TIX9 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp39Q3TIX9 Gm45760-201ENSMUST00000212190 1782 ntBASIC14.29□□□□□ -0.12
Usp39Q3TIX9 Midn-202ENSMUST00000099492 3597 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Usp39Q3TIX9 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp39Q3TIX9 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Usp39Q3TIX9 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
Usp39Q3TIX9 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
Usp39Q3TIX9 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Usp39Q3TIX9 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Usp39Q3TIX9 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp39Q3TIX9 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Usp39Q3TIX9 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp39Q3TIX9 Rasgrp2-205ENSMUST00000113471 535 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Usp39Q3TIX9 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Usp39Q3TIX9 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms