Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Cdhr5-202ENSMUST00000167263 2628 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Gm43347-201ENSMUST00000200226 580 ntBASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Ntn4-201ENSMUST00000020204 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Gm34391-201ENSMUST00000203706 907 ntBASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Vav1-201ENSMUST00000005889 2963 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Zhx3-203ENSMUST00000109460 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Srsf10-204ENSMUST00000105853 3058 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Ptchd3Q0EEE2 Exoc3l-201ENSMUST00000057855 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ptchd3Q0EEE2 Ly9-201ENSMUST00000004827 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ptchd3Q0EEE2 Kcng1-202ENSMUST00000109191 4089 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Ptchd3Q0EEE2 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ptchd3Q0EEE2 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Ptchd3Q0EEE2 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Ptchd3Q0EEE2 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ptchd3Q0EEE2 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Ptchd3Q0EEE2 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ptchd3Q0EEE2 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ptchd3Q0EEE2 Tmed8-201ENSMUST00000037418 7409 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ptchd3Q0EEE2 Fbxo21-206ENSMUST00000202447 3959 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
Ptchd3Q0EEE2 Ubc-202ENSMUST00000136312 2618 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Gm12480-201ENSMUST00000129576 774 ntTSL 3 BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Gm7286-201ENSMUST00000182691 1007 ntBASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Gm7556-201ENSMUST00000201178 1084 ntBASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Gm19164-201ENSMUST00000210667 640 ntBASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Pgm2-201ENSMUST00000058351 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Tbl1xr1-203ENSMUST00000193734 8237 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Tbrg4-201ENSMUST00000000394 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Tfe3-201ENSMUST00000077680 3277 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Pcyox1l-201ENSMUST00000025472 2017 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Loxl2-202ENSMUST00000100420 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Tmprss9-201ENSMUST00000105333 3497 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Ptchd3Q0EEE2 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Arid5a-208ENSMUST00000137906 5504 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Gm5837-201ENSMUST00000191844 1369 ntBASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Prkcz-203ENSMUST00000105624 694 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Gm24589-201ENSMUST00000116692 94 ntBASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Rbfox2-207ENSMUST00000227533 1041 ntBASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Birc2-201ENSMUST00000054878 378 ntBASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Tpr-201ENSMUST00000119161 7480 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Tgif2-201ENSMUST00000073352 2690 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Noct-201ENSMUST00000023849 3059 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ptchd3Q0EEE2 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC14.25□□□□□ -0.13
Ptchd3Q0EEE2 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ptchd3Q0EEE2 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
Ptchd3Q0EEE2 Rnf4-207ENSMUST00000182709 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ptchd3Q0EEE2 Os9-201ENSMUST00000080975 2458 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ptchd3Q0EEE2 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ptchd3Q0EEE2 AU040320-201ENSMUST00000047431 4384 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ptchd3Q0EEE2 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ptchd3Q0EEE2 Elfn2-201ENSMUST00000088592 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 16.7 ms