Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msx1P13297 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Msx1P13297 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msx1P13297 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC14.02□□□□□ -0.17
Msx1P13297 Slc23a3-201ENSMUST00000027405 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msx1P13297 Emilin3-202ENSMUST00000109454 3396 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Msx1P13297 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msx1P13297 Lrrc7-205ENSMUST00000200137 7321 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Msx1P13297 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Msx1P13297 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Msx1P13297 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msx1P13297 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msx1P13297 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msx1P13297 Gm13410-201ENSMUST00000117058 1415 ntBASIC14.01□□□□□ -0.17
Msx1P13297 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msx1P13297 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Msx1P13297 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msx1P13297 B3galt6-201ENSMUST00000052185 3184 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Msx1P13297 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msx1P13297 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msx1P13297 Pou2f3-rs1-201ENSMUST00000120271 1046 ntBASIC14.01□□□□□ -0.17
Msx1P13297 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Msx1P13297 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC14.01□□□□□ -0.17
Msx1P13297 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC14.01□□□□□ -0.17
Msx1P13297 Erdr1-202ENSMUST00000177671 708 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Msx1P13297 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC14.01□□□□□ -0.17
Msx1P13297 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Msx1P13297 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Msx1P13297 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC14.01□□□□□ -0.17
Msx1P13297 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msx1P13297 Nrxn1-209ENSMUST00000161402 4953 ntTSL 5 BASIC14.01□□□□□ -0.17
Msx1P13297 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msx1P13297 Arap3-201ENSMUST00000042944 5224 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msx1P13297 Arhgef10l-206ENSMUST00000105799 4508 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Msx1P13297 Repin1-202ENSMUST00000118229 3138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msx1P13297 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC14.01□□□□□ -0.17
Msx1P13297 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Msx1P13297 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC14□□□□□ -0.17
Msx1P13297 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Gm29340-201ENSMUST00000188763 3854 ntBASIC14□□□□□ -0.17
Msx1P13297 CT025626.1-201ENSMUST00000223735 1455 ntBASIC14□□□□□ -0.17
Msx1P13297 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Msx1P13297 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 AC159621.2-201ENSMUST00000223519 1326 ntBASIC14□□□□□ -0.17
Msx1P13297 AC154767.3-201ENSMUST00000225150 1342 ntBASIC14□□□□□ -0.17
Msx1P13297 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC14□□□□□ -0.17
Msx1P13297 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Msx1P13297 Gm27437-201ENSMUST00000183429 107 ntBASIC14□□□□□ -0.17
Msx1P13297 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Unc93b1-203ENSMUST00000162708 2266 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC14□□□□□ -0.17
Msx1P13297 Gm5184-201ENSMUST00000220417 1702 ntBASIC14□□□□□ -0.17
Msx1P13297 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Fubp3-201ENSMUST00000055244 3648 ntTSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC14□□□□□ -0.17
Msx1P13297 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Msx1P13297 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
Msx1P13297 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC14□□□□□ -0.17
Msx1P13297 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC14□□□□□ -0.17
Msx1P13297 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Slc4a5-203ENSMUST00000113900 3630 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Msx1P13297 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Msx1P13297 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Msx1P13297 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msx1P13297 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Msx1P13297 Celf4-206ENSMUST00000224553 1729 ntBASIC13.99□□□□□ -0.17
Msx1P13297 Gm12008-201ENSMUST00000117791 755 ntBASIC13.99□□□□□ -0.17
Msx1P13297 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Msx1P13297 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC13.99□□□□□ -0.17
Msx1P13297 Gm5866-201ENSMUST00000177881 973 ntBASIC13.99□□□□□ -0.17
Msx1P13297 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Msx1P13297 Dnajb6-210ENSMUST00000196528 1018 ntTSL 5 BASIC13.99□□□□□ -0.17
Msx1P13297 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC13.99□□□□□ -0.17
Msx1P13297 Gm18057-201ENSMUST00000208220 503 ntBASIC13.99□□□□□ -0.17
Msx1P13297 AC159246.1-201ENSMUST00000214478 249 ntBASIC13.99□□□□□ -0.17
Msx1P13297 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Msx1P13297 Gm10322-201ENSMUST00000095646 336 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Msx1P13297 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 60.7 ms