Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Sorbs1-208ENSMUST00000224247 2688 ntAPPRIS ALT2 BASIC13.38□□□□□ -0.27
Lmx1bO88609 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lmx1bO88609 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lmx1bO88609 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Lmx1bO88609 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Lmx1bO88609 Fgf17-202ENSMUST00000227123 1336 ntBASIC13.38□□□□□ -0.27
Lmx1bO88609 Casc4-204ENSMUST00000110586 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Mast3-201ENSMUST00000166004 5305 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Lmx1bO88609 Rab3a-202ENSMUST00000110090 1375 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
Lmx1bO88609 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Msi1-208ENSMUST00000150779 3133 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Gm6973-201ENSMUST00000117080 721 ntBASIC13.37□□□□□ -0.27
Lmx1bO88609 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC13.37□□□□□ -0.27
Lmx1bO88609 Psmb5-ps-201ENSMUST00000119744 798 ntBASIC13.37□□□□□ -0.27
Lmx1bO88609 Tspan5-203ENSMUST00000121826 1114 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Lmx1bO88609 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC13.37□□□□□ -0.27
Lmx1bO88609 Gm44872-201ENSMUST00000207864 420 ntBASIC13.37□□□□□ -0.27
Lmx1bO88609 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC13.37□□□□□ -0.27
Lmx1bO88609 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC13.37□□□□□ -0.27
Lmx1bO88609 AC140397.2-201ENSMUST00000224213 834 ntBASIC13.37□□□□□ -0.27
Lmx1bO88609 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Lmx1bO88609 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Arhgap44-201ENSMUST00000047463 4074 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Sphk1-204ENSMUST00000106386 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC13.37□□□□□ -0.27
Lmx1bO88609 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Cspg5-201ENSMUST00000035058 3870 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Lmx1bO88609 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC13.36□□□□□ -0.27
Lmx1bO88609 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC13.36□□□□□ -0.27
Lmx1bO88609 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Snph-204ENSMUST00000109877 3367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Senp6-202ENSMUST00000164859 3853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Lmx1bO88609 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC13.36□□□□□ -0.27
Lmx1bO88609 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
Lmx1bO88609 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
Lmx1bO88609 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC13.36□□□□□ -0.27
Lmx1bO88609 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC13.36□□□□□ -0.27
Lmx1bO88609 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Lmx1bO88609 AC164567.1-201ENSMUST00000219185 960 ntBASIC13.36□□□□□ -0.27
Lmx1bO88609 AC166341.4-201ENSMUST00000220625 123 ntBASIC13.36□□□□□ -0.27
Lmx1bO88609 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Lmx1bO88609 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Gatad2a-203ENSMUST00000177851 5007 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Lmx1bO88609 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC13.36□□□□□ -0.27
Lmx1bO88609 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC13.36□□□□□ -0.27
Lmx1bO88609 Sec11a-201ENSMUST00000026818 1345 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Dbn1-203ENSMUST00000109923 2940 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Lmx1bO88609 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
Lmx1bO88609 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Bin2-207ENSMUST00000183211 2036 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Lmx1bO88609 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 2010007H06Rik-202ENSMUST00000186025 4934 ntTSL 2 BASIC13.35□□□□□ -0.27
Lmx1bO88609 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Lmx1bO88609 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Lmx1bO88609 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Lmx1bO88609 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Rps13-ps4-201ENSMUST00000117927 456 ntBASIC13.35□□□□□ -0.27
Lmx1bO88609 Rps13-ps5-201ENSMUST00000117939 456 ntBASIC13.35□□□□□ -0.27
Lmx1bO88609 Gm15483-201ENSMUST00000120338 456 ntBASIC13.35□□□□□ -0.27
Lmx1bO88609 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC13.35□□□□□ -0.27
Lmx1bO88609 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Gm16026-204ENSMUST00000162652 683 ntBASIC13.35□□□□□ -0.27
Lmx1bO88609 AA543401-201ENSMUST00000164248 1269 ntBASIC13.35□□□□□ -0.27
Lmx1bO88609 Arpp19-210ENSMUST00000170308 429 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
Lmx1bO88609 AC158982.1-201ENSMUST00000228377 901 ntBASIC13.35□□□□□ -0.27
Lmx1bO88609 Gdf3-201ENSMUST00000032211 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Lmx1bO88609 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC13.35□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 28.8 ms