Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Gm5108-201ENSMUST00000177891 543 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Scn11aQ9R053 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Fkbp10-201ENSMUST00000001595 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Dlk1-205ENSMUST00000109844 1703 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 5730559C18Rik-201ENSMUST00000120339 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Arid5a-201ENSMUST00000097778 2270 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Gm17150-201ENSMUST00000165577 381 ntBASIC17.29■□□□□ 0.36
Scn11aQ9R053 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Lcmt1-204ENSMUST00000206574 1286 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Taf11-201ENSMUST00000025057 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Rit1-201ENSMUST00000029692 1204 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Scn11aQ9R053 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Tssk4-202ENSMUST00000164809 1686 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Etfrf1-205ENSMUST00000111724 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Scn11aQ9R053 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Pou5f1-201ENSMUST00000025271 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Arhgef1-201ENSMUST00000047873 3212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Cmc2-201ENSMUST00000078589 523 ntTSL 2 BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn11aQ9R053 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Chchd7-207ENSMUST00000121210 548 ntTSL 2 BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Gm40493-201ENSMUST00000210223 400 ntTSL 3 BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Gm45668-201ENSMUST00000211271 493 ntBASIC17.28■□□□□ 0.36
Scn11aQ9R053 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Gm4129-201ENSMUST00000220083 625 ntTSL 3 BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Mettl26-201ENSMUST00000026827 817 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Ftl1-201ENSMUST00000094434 968 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Scn11aQ9R053 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scn11aQ9R053 Ripk1-201ENSMUST00000021844 3266 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scn11aQ9R053 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scn11aQ9R053 Cd151-202ENSMUST00000106000 1865 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Scn11aQ9R053 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scn11aQ9R053 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scn11aQ9R053 Tomm34-202ENSMUST00000109384 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Scn11aQ9R053 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scn11aQ9R053 Gm18624-201ENSMUST00000220966 658 ntBASIC17.27■□□□□ 0.35
Scn11aQ9R053 AC121804.3-201ENSMUST00000223420 295 ntBASIC17.27■□□□□ 0.35
Scn11aQ9R053 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scn11aQ9R053 Ccdc58-201ENSMUST00000099937 747 ntTSL 3 BASIC17.27■□□□□ 0.35
Scn11aQ9R053 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scn11aQ9R053 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scn11aQ9R053 Irf8-205ENSMUST00000162001 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scn11aQ9R053 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Scn11aQ9R053 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scn11aQ9R053 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Scn11aQ9R053 Fggy-203ENSMUST00000107091 1395 ntTSL 5 BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Atp6v1h-204ENSMUST00000192698 1811 ntTSL 5 BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Dmrtc1c1-201ENSMUST00000118218 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Dmrtc1c2-203ENSMUST00000120314 1611 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Saa1-201ENSMUST00000128088 609 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Klk12-201ENSMUST00000014063 924 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Gm10766-202ENSMUST00000194123 606 ntBASIC17.26■□□□□ 0.35
Scn11aQ9R053 Gm9257-201ENSMUST00000221254 232 ntBASIC17.26■□□□□ 0.35
Scn11aQ9R053 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Gm11149-201ENSMUST00000068730 1250 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Jaml-204ENSMUST00000215880 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Dmrtc2-201ENSMUST00000011493 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Sesn3-207ENSMUST00000209187 1700 ntTSL 5 BASIC17.26■□□□□ 0.35
Scn11aQ9R053 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Scn11aQ9R053 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms