Protein–RNA interactions for Protein: Q9CQE8

RTRAF, RNA transcription, translation and transport factor protein, mousemouse

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTRAFQ9CQE8 Col9a2-201ENSMUST00000030372 2924 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Fam189b-202ENSMUST00000117278 2593 ntTSL 5 BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Aqp3-201ENSMUST00000055327 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Tspyl1-201ENSMUST00000061372 3086 ntAPPRIS P1 BASIC12.05□□□□□ -0.48
RTRAFQ9CQE8 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 1700029J07Rik-201ENSMUST00000095323 2740 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Snx13-201ENSMUST00000048519 6231 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Ppp1r12b-209ENSMUST00000168381 3621 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 E130317F20Rik-202ENSMUST00000217802 3420 ntBASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Dnajb5-204ENSMUST00000107973 2300 ntAPPRIS P2 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Plekhn1-201ENSMUST00000105569 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Fam234a-201ENSMUST00000114988 3714 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Mpped1-203ENSMUST00000109470 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Ints14-201ENSMUST00000037504 2837 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Wwox-202ENSMUST00000109107 2383 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Mir5122-201ENSMUST00000175004 89 ntBASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Gm45442-201ENSMUST00000210038 411 ntTSL 3 BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Prpf31-202ENSMUST00000108636 1798 ntTSL 5 BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Gm10125-203ENSMUST00000161096 3493 ntTSL 3 BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Abr-205ENSMUST00000108408 3534 ntTSL 5 BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Sp9-201ENSMUST00000090813 4514 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Mnt-201ENSMUST00000000291 4590 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Ociad2-204ENSMUST00000200830 2384 ntTSL 3 BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Klhdc3-201ENSMUST00000071841 2123 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
RTRAFQ9CQE8 Cfap45-201ENSMUST00000085894 1908 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Rhbdl3-201ENSMUST00000017836 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Lamc3-201ENSMUST00000028187 5871 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Edrf1-202ENSMUST00000128901 4380 ntAPPRIS ALT2 TSL 5 BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Gm37691-201ENSMUST00000192147 2573 ntBASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Agpat5-202ENSMUST00000149565 10779 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 2410002F23Rik-218ENSMUST00000188382 2301 ntAPPRIS P2 TSL 5 BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Arhgef33-211ENSMUST00000225658 473 ntBASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Dlgap3-203ENSMUST00000106094 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Nr2f1-205ENSMUST00000150498 2588 ntTSL 1 (best) BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Gm44645-201ENSMUST00000205492 1653 ntBASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 E2f3-201ENSMUST00000102948 5097 ntAPPRIS P2 TSL 1 (best) BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 B3gat1-206ENSMUST00000161431 3858 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Gm8242-201ENSMUST00000193029 1420 ntBASIC12.03□□□□□ -0.48
RTRAFQ9CQE8 Pip5k1c-201ENSMUST00000045469 4323 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
RTRAFQ9CQE8 Slc2a6-201ENSMUST00000045702 2138 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
RTRAFQ9CQE8 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.48
RTRAFQ9CQE8 Grin1-203ENSMUST00000114308 4165 ntTSL 5 BASIC12.02□□□□□ -0.48
RTRAFQ9CQE8 Cdt1-201ENSMUST00000006760 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
RTRAFQ9CQE8 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
RTRAFQ9CQE8 Emilin2-201ENSMUST00000024849 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
RTRAFQ9CQE8 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC12.02□□□□□ -0.48
RTRAFQ9CQE8 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC12.02□□□□□ -0.48
RTRAFQ9CQE8 Gse1-201ENSMUST00000034279 7127 ntAPPRIS P4 TSL 1 (best) BASIC12.02□□□□□ -0.48
RTRAFQ9CQE8 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
RTRAFQ9CQE8 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC12.02□□□□□ -0.49
RTRAFQ9CQE8 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
RTRAFQ9CQE8 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
RTRAFQ9CQE8 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC12.02□□□□□ -0.49
RTRAFQ9CQE8 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
RTRAFQ9CQE8 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
RTRAFQ9CQE8 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC12.02□□□□□ -0.49
RTRAFQ9CQE8 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
RTRAFQ9CQE8 Mto1-201ENSMUST00000034896 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 37.1 ms