Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Vta1-205ENSMUST00000154132 1974 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ccdc28bQ8CEG5 St3gal3-202ENSMUST00000097912 2143 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Ccdc28bQ8CEG5 Tcp11l1-201ENSMUST00000028597 3512 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ccdc28bQ8CEG5 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ccdc28bQ8CEG5 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ccdc28bQ8CEG5 Tnip2-201ENSMUST00000030991 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
Ccdc28bQ8CEG5 AC157650.3-201ENSMUST00000225058 1476 ntBASIC14.63□□□□□ -0.07
Ccdc28bQ8CEG5 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
Ccdc28bQ8CEG5 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Hdgfl2-210ENSMUST00000225843 2238 ntAPPRIS ALT2 BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Papd7-201ENSMUST00000044081 3994 ntAPPRIS P2 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Ociad2-201ENSMUST00000087195 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Ilvbl-208ENSMUST00000218875 3020 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Arhgef40-220ENSMUST00000182909 5108 ntAPPRIS P4 TSL 5 BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Trim34a-202ENSMUST00000106848 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Gm15358-201ENSMUST00000119249 520 ntBASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Epha1-203ENSMUST00000204357 2948 ntTSL 5 BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Gm9991-201ENSMUST00000070048 1207 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Lmx1b-201ENSMUST00000041730 4790 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Ephb2-201ENSMUST00000059287 4804 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Fgfr3-210ENSMUST00000169212 4245 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Syt13-201ENSMUST00000028648 3761 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Gpr137b-202ENSMUST00000220628 3634 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Socs3-201ENSMUST00000054002 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 4632428C04Rik-201ENSMUST00000181485 2430 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Rtkn-202ENSMUST00000087938 3080 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
Ccdc28bQ8CEG5 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Rnf114-201ENSMUST00000078050 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Tfap2a-202ENSMUST00000110193 2863 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Gm7901-201ENSMUST00000120430 1597 ntBASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Gm14963-201ENSMUST00000146751 2558 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Hdgfl2-201ENSMUST00000002911 2264 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Gm4459-201ENSMUST00000118750 468 ntBASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Pafah1b3-207ENSMUST00000155118 679 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Zfp706-204ENSMUST00000226671 447 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Rbm34-201ENSMUST00000045994 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Plcxd1-201ENSMUST00000086687 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Kbtbd7-201ENSMUST00000061222 4526 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Gpr146-201ENSMUST00000051293 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Tpm3-201ENSMUST00000029549 2230 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Grk6-207ENSMUST00000225925 2769 ntBASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Matn2-206ENSMUST00000228570 2798 ntBASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Gm42632-201ENSMUST00000201707 2411 ntBASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
Ccdc28bQ8CEG5 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Adal-205ENSMUST00000119031 2477 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Dmxl1-202ENSMUST00000180611 11319 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Hnrnpm-202ENSMUST00000114385 2550 ntTSL 2 BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Pak1-205ENSMUST00000206984 2794 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Atp2a2-202ENSMUST00000177974 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Kdm5c-202ENSMUST00000112584 5900 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Gm15165-201ENSMUST00000118140 502 ntBASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Olfr129-201ENSMUST00000122318 993 ntBASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 AC093926.2-201ENSMUST00000214468 1228 ntBASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 AC122024.2-201ENSMUST00000220086 871 ntBASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Sntb2-203ENSMUST00000212524 9945 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Rabep2-201ENSMUST00000106405 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Ccdc28bQ8CEG5 Arfip2-206ENSMUST00000131446 3275 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms