Protein–RNA interactions for Protein: Q8BMK4

Ckap4, Cytoskeleton-associated protein 4, mousemouse

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ckap4Q8BMK4 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
Ckap4Q8BMK4 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ckap4Q8BMK4 Ap3d1-201ENSMUST00000020420 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ckap4Q8BMK4 Grin2a-202ENSMUST00000115835 5023 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Ckap4Q8BMK4 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ckap4Q8BMK4 Nupl1-207ENSMUST00000225311 2475 ntBASIC14.03□□□□□ -0.16
Ckap4Q8BMK4 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ckap4Q8BMK4 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Ckap4Q8BMK4 Acot3-201ENSMUST00000021653 3431 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ckap4Q8BMK4 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ckap4Q8BMK4 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ckap4Q8BMK4 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ckap4Q8BMK4 Satb2-201ENSMUST00000042857 6277 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Ckap4Q8BMK4 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ckap4Q8BMK4 Wdr46-201ENSMUST00000025170 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ckap4Q8BMK4 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Ckap4Q8BMK4 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Ckap4Q8BMK4 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ckap4Q8BMK4 Zfyve27-207ENSMUST00000169536 5611 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ckap4Q8BMK4 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ckap4Q8BMK4 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ckap4Q8BMK4 Dnmt3b-202ENSMUST00000072997 4208 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.16
Ckap4Q8BMK4 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Olfr55-201ENSMUST00000112168 948 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Akap17b-201ENSMUST00000051906 6003 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Loxl1-201ENSMUST00000061799 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Rap2b-201ENSMUST00000049064 6793 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Lix1l-201ENSMUST00000062058 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ckap4Q8BMK4 Dr1-201ENSMUST00000031190 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Raver1-202ENSMUST00000217282 4234 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Fam163b-201ENSMUST00000151224 2959 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Gm13418-201ENSMUST00000119097 944 ntBASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Gm28659-201ENSMUST00000188013 759 ntBASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Tsn-201ENSMUST00000027623 7063 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Capn7-201ENSMUST00000022451 3648 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Irf7-201ENSMUST00000026571 1916 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Srp68-202ENSMUST00000106425 2330 ntTSL 5 BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Pttg1ip-201ENSMUST00000009435 2294 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Ckap4Q8BMK4 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Pcnx3-201ENSMUST00000068169 5276 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Wnk1-203ENSMUST00000088644 11330 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Asprv1-201ENSMUST00000043400 1547 ntAPPRIS P1 BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Slc4a1-201ENSMUST00000006749 4545 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Gm37500-201ENSMUST00000192059 1443 ntBASIC14□□□□□ -0.17
Ckap4Q8BMK4 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Dffa-202ENSMUST00000103216 1835 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Pgam1-ps1-201ENSMUST00000119107 749 ntBASIC14□□□□□ -0.17
Ckap4Q8BMK4 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC14□□□□□ -0.17
Ckap4Q8BMK4 Ascl2-202ENSMUST00000121862 814 ntAPPRIS ALT2 BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Gm11780-201ENSMUST00000136880 516 ntBASIC14□□□□□ -0.17
Ckap4Q8BMK4 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ckap4Q8BMK4 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 60.5 ms