Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC23.82■■□□□ 1.4
Ccdc88bQ4QRL3 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC23.82■■□□□ 1.4
Ccdc88bQ4QRL3 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC23.82■■□□□ 1.4
Ccdc88bQ4QRL3 1700020A23Rik-201ENSMUST00000028898 712 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ccdc88bQ4QRL3 Ins1-201ENSMUST00000039652 1016 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ccdc88bQ4QRL3 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ccdc88bQ4QRL3 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
Ccdc88bQ4QRL3 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ccdc88bQ4QRL3 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC23.82■■□□□ 1.4
Ccdc88bQ4QRL3 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
Ccdc88bQ4QRL3 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Ccdc88bQ4QRL3 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ccdc88bQ4QRL3 Gm26534-201ENSMUST00000181687 1724 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
Ccdc88bQ4QRL3 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC23.82■■□□□ 1.4
Ccdc88bQ4QRL3 Myl12a-206ENSMUST00000148960 1937 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ccdc88bQ4QRL3 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC23.82■■□□□ 1.4
Ccdc88bQ4QRL3 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Fam219aos-201ENSMUST00000151164 708 ntTSL 2 BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Mir7085-201ENSMUST00000184353 66 ntBASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 H2-Bl-210ENSMUST00000195833 829 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Gm26953-206ENSMUST00000212840 619 ntTSL 5 BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Gm36756-203ENSMUST00000223029 1166 ntTSL 5 BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Gm5357-201ENSMUST00000212720 1924 ntBASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Dnmt3a-205ENSMUST00000172689 2328 ntAPPRIS P3 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Sectm1a-203ENSMUST00000106119 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Mrps17-202ENSMUST00000118420 843 ntAPPRIS P1 TSL 2 BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Gm13568-201ENSMUST00000156099 446 ntTSL 5 BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Zfp202-203ENSMUST00000168832 3329 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Lce1j-202ENSMUST00000186525 703 ntAPPRIS P1 TSL 3 BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Gm45059-201ENSMUST00000205558 1077 ntBASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Gm44719-201ENSMUST00000206404 149 ntBASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Opn5-201ENSMUST00000068355 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Prss44-201ENSMUST00000098345 1838 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
Ccdc88bQ4QRL3 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
Ccdc88bQ4QRL3 Steap2-205ENSMUST00000115427 3470 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc88bQ4QRL3 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc88bQ4QRL3 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc88bQ4QRL3 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc88bQ4QRL3 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
Ccdc88bQ4QRL3 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc88bQ4QRL3 Taco1-201ENSMUST00000002048 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc88bQ4QRL3 Bscl2-201ENSMUST00000086058 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc88bQ4QRL3 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc88bQ4QRL3 Zmat5-201ENSMUST00000009220 792 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc88bQ4QRL3 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
Ccdc88bQ4QRL3 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 Camk2g-217ENSMUST00000226630 1937 ntBASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 P2ry2-206ENSMUST00000208340 2693 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 Nfix-203ENSMUST00000109762 2261 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 Nmi-202ENSMUST00000112705 1130 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 Gm23984-201ENSMUST00000157139 203 ntBASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 Mir1938-201ENSMUST00000158746 100 ntBASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 Inpp4a-213ENSMUST00000193774 1243 ntTSL 5 BASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 AC087891.2-201ENSMUST00000219293 658 ntTSL 5 BASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 AC121804.3-201ENSMUST00000223420 295 ntBASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 Gm9797-201ENSMUST00000052902 613 ntBASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 Csgalnact2-201ENSMUST00000049344 3661 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
Ccdc88bQ4QRL3 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ccdc88bQ4QRL3 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ccdc88bQ4QRL3 Gm16194-204ENSMUST00000141797 475 ntTSL 3 BASIC23.78■■□□□ 1.4
Ccdc88bQ4QRL3 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ccdc88bQ4QRL3 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
Ccdc88bQ4QRL3 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
Ccdc88bQ4QRL3 Gjb4-202ENSMUST00000106090 1446 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.4
Ccdc88bQ4QRL3 Gjb4-201ENSMUST00000060419 1445 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc88bQ4QRL3 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc88bQ4QRL3 Klf4-201ENSMUST00000107619 3029 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc88bQ4QRL3 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc88bQ4QRL3 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc88bQ4QRL3 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc88bQ4QRL3 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
Ccdc88bQ4QRL3 Mir6420-201ENSMUST00000185032 102 ntBASIC23.77■■□□□ 1.4
Ccdc88bQ4QRL3 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc88bQ4QRL3 Gm45668-201ENSMUST00000211271 493 ntBASIC23.77■■□□□ 1.4
Ccdc88bQ4QRL3 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc88bQ4QRL3 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc88bQ4QRL3 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc88bQ4QRL3 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC23.77■■□□□ 1.4
Ccdc88bQ4QRL3 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc88bQ4QRL3 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
Ccdc88bQ4QRL3 Gm14617-202ENSMUST00000144208 607 ntTSL 3 BASIC23.76■■□□□ 1.39
Ccdc88bQ4QRL3 Gas5-210ENSMUST00000159706 557 ntTSL 2 BASIC23.76■■□□□ 1.39
Ccdc88bQ4QRL3 1700022A21Rik-201ENSMUST00000182745 1051 ntBASIC23.76■■□□□ 1.39
Retrieved 100 of 76,532 protein–RNA pairs in 33.4 ms