Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC11.52□□□□□ -0.57
Hoxd3P09027 Gm5244-202ENSMUST00000189517 743 ntBASIC11.52□□□□□ -0.57
Hoxd3P09027 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC11.52□□□□□ -0.57
Hoxd3P09027 CT030684.1-201ENSMUST00000227292 914 ntBASIC11.52□□□□□ -0.57
Hoxd3P09027 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hoxd3P09027 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC11.52□□□□□ -0.57
Hoxd3P09027 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Hoxd3P09027 Gm10073-201ENSMUST00000073722 496 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Hoxd3P09027 Rplp1-201ENSMUST00000008036 499 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hoxd3P09027 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hoxd3P09027 Gm8096-201ENSMUST00000209921 1591 ntBASIC11.52□□□□□ -0.57
Hoxd3P09027 Rfc5-201ENSMUST00000086461 2796 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hoxd3P09027 Pld2-202ENSMUST00000108556 3391 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Hoxd3P09027 Sgms1-201ENSMUST00000099514 3665 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hoxd3P09027 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC11.52□□□□□ -0.57
Hoxd3P09027 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC11.52□□□□□ -0.57
Hoxd3P09027 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hoxd3P09027 Ankrd10-202ENSMUST00000169782 5156 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Hoxd3P09027 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC11.52□□□□□ -0.57
Hoxd3P09027 Gm42901-201ENSMUST00000197735 3171 ntBASIC11.52□□□□□ -0.57
Hoxd3P09027 Gm29340-201ENSMUST00000188763 3854 ntBASIC11.52□□□□□ -0.57
Hoxd3P09027 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hoxd3P09027 Sept4-201ENSMUST00000018544 1726 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hoxd3P09027 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Mob4-202ENSMUST00000159311 1816 ntTSL 3 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Rasgef1b-206ENSMUST00000161516 2523 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Vopp1-204ENSMUST00000145608 4590 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Pex5l-206ENSMUST00000108226 2632 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Esr1-202ENSMUST00000105588 2733 ntTSL 5 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Zfp688-201ENSMUST00000106300 1015 ntAPPRIS P1 TSL 2 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Zfp74-203ENSMUST00000108211 1278 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Nnat-209ENSMUST00000173793 386 ntTSL 5 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Gm26952-201ENSMUST00000181996 409 ntTSL 3 BASIC11.51□□□□□ -0.57
Hoxd3P09027 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Trip6-203ENSMUST00000199121 366 ntTSL 3 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Gm43125-201ENSMUST00000201724 730 ntBASIC11.51□□□□□ -0.57
Hoxd3P09027 Gm43275-201ENSMUST00000202053 1020 ntBASIC11.51□□□□□ -0.57
Hoxd3P09027 Gm5312-201ENSMUST00000203728 547 ntBASIC11.51□□□□□ -0.57
Hoxd3P09027 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC11.51□□□□□ -0.57
Hoxd3P09027 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Hist3h2a-201ENSMUST00000108817 2146 ntAPPRIS P1 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Dnajb12-201ENSMUST00000020309 2238 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Adam23-204ENSMUST00000114103 2655 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Zbtb14-203ENSMUST00000112676 3909 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Nap1l4-206ENSMUST00000208190 2259 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Slc7a15-204ENSMUST00000165657 1467 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC11.51□□□□□ -0.57
Hoxd3P09027 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC11.51□□□□□ -0.57
Hoxd3P09027 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC11.5□□□□□ -0.57
Hoxd3P09027 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Kank2-201ENSMUST00000034717 5040 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Nudt18-203ENSMUST00000228768 1578 ntBASIC11.5□□□□□ -0.57
Hoxd3P09027 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Ing4-201ENSMUST00000032480 1629 ntAPPRIS P2 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 St8sia2-201ENSMUST00000026896 5368 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
Hoxd3P09027 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC11.5□□□□□ -0.57
Hoxd3P09027 Gm6973-201ENSMUST00000117080 721 ntBASIC11.5□□□□□ -0.57
Hoxd3P09027 Gm11543-201ENSMUST00000120758 370 ntBASIC11.5□□□□□ -0.57
Hoxd3P09027 1810032O08Rik-206ENSMUST00000144049 966 ntAPPRIS P5 TSL 2 BASIC11.5□□□□□ -0.57
Hoxd3P09027 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
Hoxd3P09027 Gm28707-201ENSMUST00000186134 558 ntTSL 3 BASIC11.5□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 31.3 ms