Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Cox6b1-201ENSMUST00000075738 618 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col3a1P08121 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Col3a1P08121 Srrm1-208ENSMUST00000136342 3152 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
Col3a1P08121 Rnf114-202ENSMUST00000109214 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
Col3a1P08121 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC17.48■□□□□ 0.39
Col3a1P08121 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 4833428L15Rik-201ENSMUST00000181230 1259 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Letm2-213ENSMUST00000211422 738 ntTSL 5 BASIC17.48■□□□□ 0.39
Col3a1P08121 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Gm20445-201ENSMUST00000061905 565 ntBASIC17.48■□□□□ 0.39
Col3a1P08121 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Ash2l-201ENSMUST00000068892 3307 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Col3a1P08121 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Col3a1P08121 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC17.48■□□□□ 0.39
Col3a1P08121 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col3a1P08121 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC17.47■□□□□ 0.39
Col3a1P08121 Farp2-201ENSMUST00000120301 3937 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col3a1P08121 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col3a1P08121 Sphk1-205ENSMUST00000106387 1957 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Col3a1P08121 Trnt1-204ENSMUST00000113249 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col3a1P08121 Ubxn11-201ENSMUST00000070246 2014 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Col3a1P08121 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col3a1P08121 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col3a1P08121 4930478K11Rik-201ENSMUST00000181875 715 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col3a1P08121 AL593843.1-201ENSMUST00000195891 145 ntBASIC17.47■□□□□ 0.39
Col3a1P08121 Gm6916-202ENSMUST00000205523 195 ntBASIC17.47■□□□□ 0.39
Col3a1P08121 Gm45552-201ENSMUST00000209340 778 ntTSL 3 BASIC17.47■□□□□ 0.39
Col3a1P08121 Hsd17b14-205ENSMUST00000210300 797 ntTSL 5 BASIC17.47■□□□□ 0.39
Col3a1P08121 Gm7390-201ENSMUST00000212452 1216 ntBASIC17.47■□□□□ 0.39
Col3a1P08121 Gm6218-201ENSMUST00000219812 628 ntBASIC17.47■□□□□ 0.39
Col3a1P08121 Hist1h3b-201ENSMUST00000091703 620 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Col3a1P08121 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
Col3a1P08121 Gm21983-201ENSMUST00000154724 1690 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
Col3a1P08121 Coch-202ENSMUST00000164782 2681 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col3a1P08121 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col3a1P08121 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col3a1P08121 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
Col3a1P08121 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC17.46■□□□□ 0.39
Col3a1P08121 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 Tcf19-203ENSMUST00000161012 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Col3a1P08121 Gm12212-201ENSMUST00000141032 378 ntTSL 3 BASIC17.46■□□□□ 0.39
Col3a1P08121 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Col3a1P08121 Gm9522-201ENSMUST00000182394 926 ntBASIC17.46■□□□□ 0.39
Col3a1P08121 Mrpl36-201ENSMUST00000022098 923 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 Cd302-201ENSMUST00000028356 1257 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 Trappc4-201ENSMUST00000034623 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 Rnf151-201ENSMUST00000008626 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 Gpr137-205ENSMUST00000166115 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 4930429P21Rik-202ENSMUST00000194547 2061 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
Col3a1P08121 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC17.46■□□□□ 0.39
Col3a1P08121 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC17.46■□□□□ 0.39
Col3a1P08121 3830417A13Rik-201ENSMUST00000033522 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col3a1P08121 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
Col3a1P08121 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC17.46■□□□□ 0.38
Col3a1P08121 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col3a1P08121 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col3a1P08121 Gm12859-201ENSMUST00000117834 427 ntBASIC17.45■□□□□ 0.38
Col3a1P08121 Crybb3-203ENSMUST00000118226 892 ntAPPRIS P1 TSL 3 BASIC17.45■□□□□ 0.38
Col3a1P08121 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC17.45■□□□□ 0.38
Col3a1P08121 Gm12882-201ENSMUST00000121696 517 ntBASIC17.45■□□□□ 0.38
Col3a1P08121 Hoxa7-203ENSMUST00000140316 643 ntTSL 3 BASIC17.45■□□□□ 0.38
Col3a1P08121 Haglr-202ENSMUST00000152462 443 ntTSL 2 BASIC17.45■□□□□ 0.38
Col3a1P08121 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col3a1P08121 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Col3a1P08121 Mt1-201ENSMUST00000034215 549 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col3a1P08121 Crybb3-201ENSMUST00000076069 816 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col3a1P08121 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
Col3a1P08121 Gm45667-201ENSMUST00000210380 1316 ntBASIC17.45■□□□□ 0.38
Col3a1P08121 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Col3a1P08121 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col3a1P08121 Trmt1-201ENSMUST00000001974 2567 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col3a1P08121 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col3a1P08121 Serpina11-202ENSMUST00000120251 1461 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 35 ms