Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Scn4aQ9ER60 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Scn4aQ9ER60 Gm13587-201ENSMUST00000152645 366 ntTSL 5 BASIC19.83■□□□□ 0.77
Scn4aQ9ER60 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC19.83■□□□□ 0.77
Scn4aQ9ER60 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Scn4aQ9ER60 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Scn4aQ9ER60 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Scn4aQ9ER60 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Scn4aQ9ER60 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
Scn4aQ9ER60 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Scn4aQ9ER60 Gm3756-201ENSMUST00000169182 1355 ntBASIC19.83■□□□□ 0.76
Scn4aQ9ER60 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Scn4aQ9ER60 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Scn4aQ9ER60 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Scn4aQ9ER60 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC19.83■□□□□ 0.76
Scn4aQ9ER60 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Scn4aQ9ER60 Gm11439-201ENSMUST00000118598 409 ntBASIC19.83■□□□□ 0.76
Scn4aQ9ER60 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC19.83■□□□□ 0.76
Scn4aQ9ER60 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
Scn4aQ9ER60 Gm31992-201ENSMUST00000213387 862 ntTSL 5 BASIC19.83■□□□□ 0.76
Scn4aQ9ER60 Bnip3l-ps-202ENSMUST00000220709 1132 ntBASIC19.83■□□□□ 0.76
Scn4aQ9ER60 Mpp4-201ENSMUST00000066374 2344 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
Scn4aQ9ER60 Mpp4-202ENSMUST00000078874 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Scn4aQ9ER60 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Scn4aQ9ER60 Acr-201ENSMUST00000023295 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scn4aQ9ER60 Wfdc1-201ENSMUST00000024107 1371 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scn4aQ9ER60 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scn4aQ9ER60 1500011K16Rik-201ENSMUST00000135091 800 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scn4aQ9ER60 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC19.82■□□□□ 0.76
Scn4aQ9ER60 Mir5120-201ENSMUST00000175020 78 ntBASIC19.82■□□□□ 0.76
Scn4aQ9ER60 Gm9124-201ENSMUST00000191789 1092 ntBASIC19.82■□□□□ 0.76
Scn4aQ9ER60 Gm9113-201ENSMUST00000192510 1018 ntBASIC19.82■□□□□ 0.76
Scn4aQ9ER60 Gm9131-201ENSMUST00000193557 1089 ntBASIC19.82■□□□□ 0.76
Scn4aQ9ER60 Gm9121-201ENSMUST00000193749 1071 ntBASIC19.82■□□□□ 0.76
Scn4aQ9ER60 Snora73a-201ENSMUST00000082453 205 ntBASIC19.82■□□□□ 0.76
Scn4aQ9ER60 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scn4aQ9ER60 Gm36839-201ENSMUST00000222088 2093 ntTSL 5 BASIC19.82■□□□□ 0.76
Scn4aQ9ER60 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scn4aQ9ER60 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
Scn4aQ9ER60 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scn4aQ9ER60 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scn4aQ9ER60 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Scn4aQ9ER60 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scn4aQ9ER60 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scn4aQ9ER60 Gm44608-201ENSMUST00000206827 855 ntBASIC19.81■□□□□ 0.76
Scn4aQ9ER60 Aspdh-201ENSMUST00000035929 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scn4aQ9ER60 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scn4aQ9ER60 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scn4aQ9ER60 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scn4aQ9ER60 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC19.81■□□□□ 0.76
Scn4aQ9ER60 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Scn4aQ9ER60 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Scn4aQ9ER60 Fam71e1-201ENSMUST00000107927 862 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scn4aQ9ER60 Selenot-ps-201ENSMUST00000119098 593 ntBASIC19.81■□□□□ 0.76
Scn4aQ9ER60 Gm5678-201ENSMUST00000120115 939 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Scn4aQ9ER60 Rpl27a-203ENSMUST00000143107 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scn4aQ9ER60 Gm11290-203ENSMUST00000147811 314 ntTSL 5 BASIC19.81■□□□□ 0.76
Scn4aQ9ER60 Gm25927-201ENSMUST00000175058 117 ntBASIC19.81■□□□□ 0.76
Scn4aQ9ER60 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Scn4aQ9ER60 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC19.81■□□□□ 0.76
Scn4aQ9ER60 Cxadr-202ENSMUST00000114229 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 Ifi35-201ENSMUST00000010502 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 Gm6871-201ENSMUST00000073410 1430 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 Lamp2-203ENSMUST00000074913 2184 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 Crem-201ENSMUST00000025069 2931 ntTSL 5 BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 Gm43763-201ENSMUST00000201761 683 ntTSL 3 BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 Gm8959-201ENSMUST00000213150 571 ntBASIC19.8■□□□□ 0.76
Scn4aQ9ER60 AC148335.1-201ENSMUST00000218778 818 ntTSL 5 BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 Snx29-207ENSMUST00000180792 2667 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 B3gnt8-201ENSMUST00000076034 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 Fbp1-201ENSMUST00000092888 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Scn4aQ9ER60 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scn4aQ9ER60 AC153526.5-201ENSMUST00000218661 2147 ntBASIC19.79■□□□□ 0.76
Scn4aQ9ER60 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scn4aQ9ER60 6030498E09Rik-202ENSMUST00000168144 510 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Scn4aQ9ER60 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Scn4aQ9ER60 Gm4935-201ENSMUST00000221316 1198 ntBASIC19.79■□□□□ 0.76
Scn4aQ9ER60 Gm8227-201ENSMUST00000223306 571 ntBASIC19.79■□□□□ 0.76
Scn4aQ9ER60 Fam92b-201ENSMUST00000048786 1187 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Scn4aQ9ER60 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Scn4aQ9ER60 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
Scn4aQ9ER60 Disp2-202ENSMUST00000063975 1505 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Scn4aQ9ER60 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scn4aQ9ER60 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scn4aQ9ER60 Aire-207ENSMUST00000140636 1615 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Scn4aQ9ER60 Hbegf-201ENSMUST00000025363 2373 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scn4aQ9ER60 Nt5c2-202ENSMUST00000168536 3769 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scn4aQ9ER60 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scn4aQ9ER60 Map3k8-201ENSMUST00000025078 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Scn4aQ9ER60 Gm3045-201ENSMUST00000212844 1825 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Scn4aQ9ER60 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
Scn4aQ9ER60 Gm15370-201ENSMUST00000117158 253 ntBASIC19.79■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 40.8 ms