Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm43703-201ENSMUST00000200523 763 ntBASIC20.25■□□□□ 0.83
Usp40Q8BWR4 Gm9182-201ENSMUST00000217829 639 ntBASIC20.25■□□□□ 0.83
Usp40Q8BWR4 Aip-201ENSMUST00000025767 1261 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp40Q8BWR4 Pdlim7-203ENSMUST00000069968 1006 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Usp40Q8BWR4 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp40Q8BWR4 Vwa5b2-203ENSMUST00000100074 2512 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp40Q8BWR4 Akap1-201ENSMUST00000018572 3758 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp40Q8BWR4 Asic1-205ENSMUST00000228185 1818 ntBASIC20.25■□□□□ 0.83
Usp40Q8BWR4 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Usp40Q8BWR4 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Tubg2-201ENSMUST00000043654 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Gale-201ENSMUST00000102540 1537 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Ier5-201ENSMUST00000055322 3276 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Rgs19-203ENSMUST00000108771 1110 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Rgs19-205ENSMUST00000108776 1216 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Rpl17-ps10-201ENSMUST00000119383 555 ntBASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Rpl17-ps9-201ENSMUST00000119541 555 ntBASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Rpl17-ps4-201ENSMUST00000120241 555 ntBASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Gm15321-201ENSMUST00000121290 288 ntBASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Gstt1-201ENSMUST00000001713 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Gm46209-201ENSMUST00000217912 553 ntBASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Mesp1-201ENSMUST00000032760 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Usp40Q8BWR4 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Arf2-201ENSMUST00000057921 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Fscn1-201ENSMUST00000031565 2675 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Apoa4-201ENSMUST00000034585 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Wdr70-201ENSMUST00000045766 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Gm4204-201ENSMUST00000110798 1231 ntBASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Ptpa-203ENSMUST00000113603 2169 ntTSL 5 BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Gm13496-201ENSMUST00000141133 1165 ntTSL 2 BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Gm11899-201ENSMUST00000142373 745 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Gltpd2-202ENSMUST00000179000 794 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Gm37267-201ENSMUST00000194222 681 ntTSL 2 BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Zyx-207ENSMUST00000203652 2605 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Gm44855-201ENSMUST00000205725 362 ntBASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Gm45453-201ENSMUST00000211758 853 ntBASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Gm5186-201ENSMUST00000218781 920 ntBASIC20.23■□□□□ 0.83
Usp40Q8BWR4 AC124732.1-201ENSMUST00000221551 910 ntBASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Arhgef33-209ENSMUST00000225223 714 ntBASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Calml4-201ENSMUST00000034777 864 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Prr23a2-201ENSMUST00000071302 881 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Nkd2-202ENSMUST00000118096 2801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC20.23■□□□□ 0.83
Usp40Q8BWR4 1810014B01Rik-201ENSMUST00000181587 1661 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Ush1c-207ENSMUST00000176371 1865 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Mafg-203ENSMUST00000106181 840 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Unc5a-202ENSMUST00000109994 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Tex12-202ENSMUST00000217236 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Ndufa8-201ENSMUST00000070112 861 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Gm6263-201ENSMUST00000120029 1342 ntBASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Pcsk6-201ENSMUST00000055576 4405 ntAPPRIS P3 TSL 5 BASIC20.22■□□□□ 0.83
Usp40Q8BWR4 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Gm7488-201ENSMUST00000117148 684 ntBASIC20.21■□□□□ 0.83
Usp40Q8BWR4 4930527A07Rik-201ENSMUST00000130677 559 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Usp40Q8BWR4 Gm29667-201ENSMUST00000190817 490 ntBASIC20.21■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 71.2 ms