Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 Prdm4-201ENSMUST00000037646 3877 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC15.66■□□□□ 0.1
Shmt1P50431 Smox-208ENSMUST00000110188 1991 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 Neurod2-201ENSMUST00000041685 3142 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Shmt1P50431 Bptf-201ENSMUST00000057892 11488 ntAPPRIS P2 TSL 5 BASIC15.65■□□□□ 0.1
Shmt1P50431 Dcun1d3-203ENSMUST00000106519 1475 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Shmt1P50431 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Kcnn1-208ENSMUST00000212611 2528 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Klk10-201ENSMUST00000014058 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Arfgap1-214ENSMUST00000185115 1393 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
Shmt1P50431 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Trav13-3-201ENSMUST00000117226 336 ntBASIC15.65■□□□□ 0.1
Shmt1P50431 Gm13464-201ENSMUST00000119418 935 ntBASIC15.65■□□□□ 0.1
Shmt1P50431 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC15.65■□□□□ 0.1
Shmt1P50431 Gm16163-201ENSMUST00000161868 1119 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Nckipsd-206ENSMUST00000195323 467 ntTSL 3 BASIC15.65■□□□□ 0.1
Shmt1P50431 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Gcnt4-201ENSMUST00000171324 5087 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC15.65■□□□□ 0.1
Shmt1P50431 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC15.65■□□□□ 0.1
Shmt1P50431 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Osr2-201ENSMUST00000022952 1724 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Nrxn1-204ENSMUST00000159778 3414 ntTSL 5 BASIC15.65■□□□□ 0.1
Shmt1P50431 Ybx1-201ENSMUST00000079644 1628 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Shmt1P50431 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC15.64■□□□□ 0.1
Shmt1P50431 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
Shmt1P50431 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Shmt1P50431 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Shmt1P50431 Npnt-206ENSMUST00000117811 4532 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Shmt1P50431 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Shmt1P50431 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Shmt1P50431 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Shmt1P50431 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Shmt1P50431 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Shmt1P50431 Tex22-202ENSMUST00000109729 735 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Shmt1P50431 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Shmt1P50431 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC15.64■□□□□ 0.09
Shmt1P50431 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC15.64■□□□□ 0.09
Shmt1P50431 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Shmt1P50431 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Shmt1P50431 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Shmt1P50431 Gm5312-201ENSMUST00000203728 547 ntBASIC15.64■□□□□ 0.09
Shmt1P50431 Pbk-201ENSMUST00000022612 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Shmt1P50431 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Shmt1P50431 Sumo3-202ENSMUST00000099538 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Shmt1P50431 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Shmt1P50431 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Shmt1P50431 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Shmt1P50431 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Shmt1P50431 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
Shmt1P50431 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC15.63■□□□□ 0.09
Shmt1P50431 Insc-201ENSMUST00000117543 2170 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Shmt1P50431 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC15.63■□□□□ 0.09
Shmt1P50431 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Tmcc3-201ENSMUST00000065060 5530 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Gm42632-201ENSMUST00000201707 2411 ntBASIC15.63■□□□□ 0.09
Shmt1P50431 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
Shmt1P50431 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Gm2810-201ENSMUST00000118681 990 ntBASIC15.63■□□□□ 0.09
Shmt1P50431 Gm11543-201ENSMUST00000120758 370 ntBASIC15.63■□□□□ 0.09
Shmt1P50431 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
Shmt1P50431 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Snu13-203ENSMUST00000166578 1061 ntTSL 2 BASIC15.63■□□□□ 0.09
Shmt1P50431 Gm37171-201ENSMUST00000192636 1185 ntBASIC15.63■□□□□ 0.09
Shmt1P50431 Gm33785-201ENSMUST00000222961 886 ntTSL 5 BASIC15.63■□□□□ 0.09
Shmt1P50431 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Guca2b-201ENSMUST00000044426 605 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC15.63■□□□□ 0.09
Shmt1P50431 Grid2-201ENSMUST00000095852 5860 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Dok7-201ENSMUST00000050709 2498 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Cadps2-204ENSMUST00000115356 3533 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Shmt1P50431 Tsc22d3-203ENSMUST00000112996 1552 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 Gm20743-201ENSMUST00000191735 1576 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Shmt1P50431 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 38.2 ms