Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Ptprs-211ENSMUST00000223859 5588 ntBASIC14.03□□□□□ -0.16
Cdx2P43241 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Cdx2P43241 Acbd5-204ENSMUST00000114529 3630 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Cdx2P43241 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Cdx2P43241 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cdx2P43241 Lrp8-201ENSMUST00000030356 4555 ntAPPRIS P5 TSL 5 BASIC14.02□□□□□ -0.16
Cdx2P43241 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Cdx2P43241 Dap3-207ENSMUST00000173135 1409 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Cdx2P43241 Gm29154-231ENSMUST00000215120 1367 ntTSL 5 BASIC14.02□□□□□ -0.17
Cdx2P43241 Lpar5-201ENSMUST00000088292 1393 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx2P43241 Klk8-201ENSMUST00000085461 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx2P43241 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx2P43241 Hist1h4d-201ENSMUST00000102968 1138 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Cdx2P43241 Crip3-202ENSMUST00000113465 1035 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx2P43241 Gm11478-201ENSMUST00000117851 599 ntBASIC14.02□□□□□ -0.17
Cdx2P43241 Gm12091-201ENSMUST00000146791 830 ntBASIC14.02□□□□□ -0.17
Cdx2P43241 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC14.02□□□□□ -0.17
Cdx2P43241 Gm4691-201ENSMUST00000182339 1000 ntBASIC14.02□□□□□ -0.17
Cdx2P43241 Gm18018-201ENSMUST00000198273 408 ntBASIC14.02□□□□□ -0.17
Cdx2P43241 Gm2451-201ENSMUST00000199447 999 ntBASIC14.02□□□□□ -0.17
Cdx2P43241 Gm10290-201ENSMUST00000200451 999 ntBASIC14.02□□□□□ -0.17
Cdx2P43241 Coa6-202ENSMUST00000211868 564 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx2P43241 Gm7390-201ENSMUST00000212452 1216 ntBASIC14.02□□□□□ -0.17
Cdx2P43241 AC153937.4-201ENSMUST00000218479 661 ntTSL 3 BASIC14.02□□□□□ -0.17
Cdx2P43241 Ndufc2-201ENSMUST00000032882 683 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx2P43241 Rps11-201ENSMUST00000003521 661 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx2P43241 H2bfm-201ENSMUST00000059808 1052 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Cdx2P43241 Prtn3-201ENSMUST00000006679 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx2P43241 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Cdx2P43241 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Cdx2P43241 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.17
Cdx2P43241 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx2P43241 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx2P43241 Tom1-202ENSMUST00000165630 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx2P43241 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx2P43241 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx2P43241 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Cdx2P43241 Gm20628-201ENSMUST00000177363 3215 ntBASIC14.02□□□□□ -0.17
Cdx2P43241 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Lenep-201ENSMUST00000057431 1806 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Cdx2P43241 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Arpc4-203ENSMUST00000203578 1323 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Prrx2-202ENSMUST00000113592 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC14.01□□□□□ -0.17
Cdx2P43241 Gm15294-202ENSMUST00000182079 366 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Cdx2P43241 4930592C13Rik-201ENSMUST00000196791 661 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Gm19265-201ENSMUST00000201818 894 ntTSL 3 BASIC14.01□□□□□ -0.17
Cdx2P43241 Gm45059-201ENSMUST00000205558 1077 ntBASIC14.01□□□□□ -0.17
Cdx2P43241 Gm9908-201ENSMUST00000211534 448 ntBASIC14.01□□□□□ -0.17
Cdx2P43241 Gm45453-201ENSMUST00000211758 853 ntBASIC14.01□□□□□ -0.17
Cdx2P43241 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 S100a7a-201ENSMUST00000079286 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Cdx2P43241 Acap3-201ENSMUST00000079031 4301 ntTSL 5 BASIC14.01□□□□□ -0.17
Cdx2P43241 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Map3k12-207ENSMUST00000169377 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Mier2-203ENSMUST00000165028 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
Cdx2P43241 Klhdc4-210ENSMUST00000174717 1662 ntTSL 5 BASIC14.01□□□□□ -0.17
Cdx2P43241 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Cdx2P43241 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 Micall1-201ENSMUST00000040320 6701 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 Map3k3-201ENSMUST00000002044 3450 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 Cyb5r1-201ENSMUST00000027726 1837 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 Tmem219-204ENSMUST00000121532 915 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 E130201H02Rik-201ENSMUST00000123576 851 ntBASIC14□□□□□ -0.17
Cdx2P43241 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Cdx2P43241 Gm15491-201ENSMUST00000133963 751 ntTSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 Gm12446-202ENSMUST00000152069 713 ntTSL 2 BASIC14□□□□□ -0.17
Cdx2P43241 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 Tbc1d17-209ENSMUST00000207293 692 ntTSL 3 BASIC14□□□□□ -0.17
Cdx2P43241 Gm9229-201ENSMUST00000222777 126 ntBASIC14□□□□□ -0.17
Cdx2P43241 Bccip-201ENSMUST00000033282 1244 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Cdx2P43241 Gm25857-201ENSMUST00000082788 129 ntBASIC14□□□□□ -0.17
Cdx2P43241 Gm10313-201ENSMUST00000095320 1002 ntBASIC14□□□□□ -0.17
Cdx2P43241 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms