Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
Lire1P11260 Tbc1d1-201ENSMUST00000043893 6471 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
Lire1P11260 Ralyl-206ENSMUST00000193117 2933 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
Lire1P11260 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC14.07□□□□□ -0.16
Lire1P11260 Zbtb20-205ENSMUST00000114695 2977 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Tigd5-201ENSMUST00000192937 4801 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Lire1P11260 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
Lire1P11260 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Celf1-214ENSMUST00000177642 7806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Lire1P11260 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Uxs1-202ENSMUST00000126008 4620 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Gm12134-201ENSMUST00000122109 520 ntBASIC14.07□□□□□ -0.16
Lire1P11260 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
Lire1P11260 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC14.07□□□□□ -0.16
Lire1P11260 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC14.07□□□□□ -0.16
Lire1P11260 Gm43935-201ENSMUST00000203569 1050 ntBASIC14.07□□□□□ -0.16
Lire1P11260 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC14.07□□□□□ -0.16
Lire1P11260 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
Lire1P11260 Secisbp2l-201ENSMUST00000053699 6797 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC14.07□□□□□ -0.16
Lire1P11260 Epb41l1-205ENSMUST00000109574 5904 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Arl6ip6-201ENSMUST00000028336 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Fbn1-201ENSMUST00000028633 9847 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Atf3-201ENSMUST00000027941 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Gckr-201ENSMUST00000072228 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Lire1P11260 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Lire1P11260 Slk-202ENSMUST00000051691 4239 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Lire1P11260 Usp51-201ENSMUST00000095755 2204 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 BC037032-201ENSMUST00000140003 3974 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Pcdha6-202ENSMUST00000193777 5367 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Rragb-201ENSMUST00000039720 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Zkscan17-201ENSMUST00000013262 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.16
Lire1P11260 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC14.06□□□□□ -0.16
Lire1P11260 Bhlhe41-202ENSMUST00000111703 744 ntTSL 3 BASIC14.06□□□□□ -0.16
Lire1P11260 Gm14140-201ENSMUST00000119999 995 ntBASIC14.06□□□□□ -0.16
Lire1P11260 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC14.06□□□□□ -0.16
Lire1P11260 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC14.06□□□□□ -0.16
Lire1P11260 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC14.06□□□□□ -0.16
Lire1P11260 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
Lire1P11260 Gm6550-201ENSMUST00000187574 993 ntBASIC14.06□□□□□ -0.16
Lire1P11260 Gm42670-201ENSMUST00000201816 1292 ntBASIC14.06□□□□□ -0.16
Lire1P11260 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC14.06□□□□□ -0.16
Lire1P11260 Stard3nl-209ENSMUST00000221380 1268 ntTSL 5 BASIC14.06□□□□□ -0.16
Lire1P11260 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Coq10b-202ENSMUST00000087617 834 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Ikzf1-204ENSMUST00000076700 5163 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Mrap2-202ENSMUST00000113149 2112 ntAPPRIS P1 TSL 5 BASIC14.06□□□□□ -0.16
Lire1P11260 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Lire1P11260 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Sorbs1-203ENSMUST00000165212 2175 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
Lire1P11260 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC14.06□□□□□ -0.16
Lire1P11260 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Gm15594-201ENSMUST00000137958 2215 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Lire1P11260 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
Lire1P11260 Loxl2-201ENSMUST00000022660 5316 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Slc7a15-201ENSMUST00000036938 1907 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Rara-203ENSMUST00000107474 2380 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Lire1P11260 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
Lire1P11260 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Lias-202ENSMUST00000122026 1668 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
Lire1P11260 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Lire1P11260 Gm7222-201ENSMUST00000117512 906 ntBASIC14.05□□□□□ -0.16
Lire1P11260 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC14.05□□□□□ -0.16
Lire1P11260 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms