Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Gm16178-201ENSMUST00000129408 677 ntTSL 2 BASIC11.54□□□□□ -0.56
Hoxd3P09027 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC11.54□□□□□ -0.56
Hoxd3P09027 Mpped1-210ENSMUST00000172115 795 ntTSL 3 BASIC11.54□□□□□ -0.56
Hoxd3P09027 Mpped1-211ENSMUST00000172398 795 ntTSL 3 BASIC11.54□□□□□ -0.56
Hoxd3P09027 Gm18889-201ENSMUST00000174284 929 ntBASIC11.54□□□□□ -0.56
Hoxd3P09027 Prr29-205ENSMUST00000190268 1141 ntAPPRIS ALT2 TSL 5 BASIC11.54□□□□□ -0.56
Hoxd3P09027 Gm37720-201ENSMUST00000195497 1241 ntBASIC11.54□□□□□ -0.56
Hoxd3P09027 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC11.54□□□□□ -0.56
Hoxd3P09027 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC11.54□□□□□ -0.56
Hoxd3P09027 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC11.54□□□□□ -0.56
Hoxd3P09027 Snrnp25-201ENSMUST00000039601 821 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC11.54□□□□□ -0.56
Hoxd3P09027 1700086L19Rik-201ENSMUST00000095617 706 ntBASIC11.54□□□□□ -0.56
Hoxd3P09027 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
Hoxd3P09027 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC11.54□□□□□ -0.56
Hoxd3P09027 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 AC107452.3-201ENSMUST00000228807 1308 ntBASIC11.54□□□□□ -0.56
Hoxd3P09027 4933412A08Rik-201ENSMUST00000061046 1343 ntBASIC11.54□□□□□ -0.56
Hoxd3P09027 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Gm26560-201ENSMUST00000181240 2619 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Dnajc6-205ENSMUST00000106933 5191 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
Hoxd3P09027 Gm27528-202ENSMUST00000222916 2012 ntBASIC11.53□□□□□ -0.56
Hoxd3P09027 Rpl5-201ENSMUST00000082223 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC11.53□□□□□ -0.56
Hoxd3P09027 Zfp612-202ENSMUST00000212754 4863 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Ambra1-205ENSMUST00000111317 4929 ntTSL 5 BASIC11.53□□□□□ -0.56
Hoxd3P09027 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Gm8242-201ENSMUST00000193029 1420 ntBASIC11.53□□□□□ -0.56
Hoxd3P09027 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC11.53□□□□□ -0.56
Hoxd3P09027 Dact1-201ENSMUST00000061273 3650 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Cdyl2-201ENSMUST00000109102 2411 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Ccdc154-201ENSMUST00000073277 2417 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Hoxd3P09027 Dennd5b-201ENSMUST00000111557 9831 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Hoxd3P09027 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Hoxd3P09027 Synj2bp-202ENSMUST00000114201 1121 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Ercc8-202ENSMUST00000120672 1144 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Gm15593-201ENSMUST00000122085 1008 ntBASIC11.53□□□□□ -0.56
Hoxd3P09027 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
Hoxd3P09027 2410006H16Rik-201ENSMUST00000131787 462 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC11.53□□□□□ -0.56
Hoxd3P09027 Gm16026-204ENSMUST00000162652 683 ntBASIC11.53□□□□□ -0.56
Hoxd3P09027 Mir6990-201ENSMUST00000183724 91 ntBASIC11.53□□□□□ -0.56
Hoxd3P09027 Gm6358-202ENSMUST00000187643 489 ntAPPRIS P5 BASIC11.53□□□□□ -0.56
Hoxd3P09027 Gm43767-201ENSMUST00000198933 381 ntBASIC11.53□□□□□ -0.56
Hoxd3P09027 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Gm18057-201ENSMUST00000208220 503 ntBASIC11.53□□□□□ -0.56
Hoxd3P09027 AC114573.1-201ENSMUST00000224120 1210 ntBASIC11.53□□□□□ -0.56
Hoxd3P09027 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC11.53□□□□□ -0.56
Hoxd3P09027 Cacna2d1-205ENSMUST00000167946 7436 ntAPPRIS ALT1 TSL 5 BASIC11.53□□□□□ -0.56
Hoxd3P09027 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC11.53□□□□□ -0.56
Hoxd3P09027 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 A430035B10Rik-204ENSMUST00000148063 2010 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
Hoxd3P09027 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Hhat-201ENSMUST00000044190 2839 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Zfp109-203ENSMUST00000206960 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Akirin2-201ENSMUST00000084299 1397 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Hoxd3P09027 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hoxd3P09027 Dsel-201ENSMUST00000035462 5759 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hoxd3P09027 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hoxd3P09027 Agbl5-202ENSMUST00000114700 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hoxd3P09027 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hoxd3P09027 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hoxd3P09027 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hoxd3P09027 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC11.52□□□□□ -0.56
Hoxd3P09027 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hoxd3P09027 Gm44616-201ENSMUST00000206417 1732 ntBASIC11.52□□□□□ -0.56
Hoxd3P09027 Celf4-206ENSMUST00000224553 1729 ntBASIC11.52□□□□□ -0.56
Hoxd3P09027 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hoxd3P09027 Gtpbp3-201ENSMUST00000007754 2800 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Hoxd3P09027 Mex3c-201ENSMUST00000091852 3738 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hoxd3P09027 P4ha2-215ENSMUST00000174616 2094 ntTSL 5 BASIC11.52□□□□□ -0.57
Hoxd3P09027 Plxna1-202ENSMUST00000163139 9034 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hoxd3P09027 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hoxd3P09027 Cand2-201ENSMUST00000075995 5474 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hoxd3P09027 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Hoxd3P09027 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.57
Hoxd3P09027 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC11.52□□□□□ -0.57
Hoxd3P09027 Gm11201-201ENSMUST00000143473 701 ntTSL 3 BASIC11.52□□□□□ -0.57
Hoxd3P09027 Med22-201ENSMUST00000015920 973 ntAPPRIS P4 TSL 2 BASIC11.52□□□□□ -0.57
Hoxd3P09027 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC11.52□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms