Protein–RNA interactions for Protein: Q9CQ71

Rpa3, Replication protein A 14 kDa subunit, mousemouse

Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa3Q9CQ71 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Snx11-201ENSMUST00000021246 2551 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Gm5177-201ENSMUST00000183092 997 ntBASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Rpa3Q9CQ71 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Bsx-201ENSMUST00000067375 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Gm45133-201ENSMUST00000207548 2773 ntBASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Mir8117-201ENSMUST00000184773 107 ntBASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Gm45683-201ENSMUST00000210825 1247 ntBASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 AC090659.1-201ENSMUST00000224334 768 ntBASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Gm14780-201ENSMUST00000118387 2737 ntBASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Fzd7-201ENSMUST00000114246 4532 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Afg3l2-201ENSMUST00000025408 3085 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Ccnj-203ENSMUST00000120057 3783 ntTSL 5 BASIC15.69■□□□□ 0.1
Rpa3Q9CQ71 Irf3-202ENSMUST00000107834 1429 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Adamts7-201ENSMUST00000113059 5379 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Camta1-203ENSMUST00000105668 4962 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Cd164l2-201ENSMUST00000105910 986 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Gm15467-201ENSMUST00000120582 445 ntBASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 AC154572.2-201ENSMUST00000225105 997 ntBASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 AC159295.1-201ENSMUST00000225326 940 ntBASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Gm10154-201ENSMUST00000084445 354 ntBASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Acat3-201ENSMUST00000043923 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Shroom3-202ENSMUST00000113054 6401 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Rpa3Q9CQ71 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rpa3Q9CQ71 Gm21009-201ENSMUST00000197169 1669 ntBASIC15.67■□□□□ 0.1
Rpa3Q9CQ71 Gm37305-201ENSMUST00000195714 4279 ntBASIC15.67■□□□□ 0.1
Rpa3Q9CQ71 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rpa3Q9CQ71 Cpne6-201ENSMUST00000074225 2201 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rpa3Q9CQ71 Adam10-201ENSMUST00000067880 4593 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rpa3Q9CQ71 Cnnm2-201ENSMUST00000077666 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rpa3Q9CQ71 Dnajc24-201ENSMUST00000102555 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Rpa3Q9CQ71 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC15.67■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 30.4 ms