Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 2010010A06Rik-202ENSMUST00000186356 694 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 AC151836.1-202ENSMUST00000226259 753 ntBASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Ndufb10-201ENSMUST00000045602 732 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Myo1c-204ENSMUST00000108431 4718 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Gm9917-201ENSMUST00000180865 5192 ntTSL 3 BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Tmem30a-202ENSMUST00000120690 3627 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Arid1b-202ENSMUST00000115797 11325 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Trim59-201ENSMUST00000107802 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
Ccdc40Q8BI79 Fbln1-202ENSMUST00000109432 2273 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 Lrp8os2-204ENSMUST00000188737 3078 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 Pigg-202ENSMUST00000118910 3030 ntTSL 5 BASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 Gm15173-201ENSMUST00000122049 433 ntBASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 4930481B07Rik-201ENSMUST00000128160 1089 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 Gm6550-201ENSMUST00000187574 993 ntBASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 Gm28659-201ENSMUST00000188013 759 ntBASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 CT009510.1-201ENSMUST00000227972 270 ntBASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
Ccdc40Q8BI79 Zfp362-201ENSMUST00000071108 2674 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ccdc40Q8BI79 Eef2kmt-201ENSMUST00000064635 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ccdc40Q8BI79 Gm45293-201ENSMUST00000209754 1812 ntBASIC15.52■□□□□ 0.07
Ccdc40Q8BI79 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.07
Ccdc40Q8BI79 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ccdc40Q8BI79 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Ccdc40Q8BI79 Tacc3-201ENSMUST00000074849 2669 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Kif3a-201ENSMUST00000057330 2290 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Grk6-207ENSMUST00000225925 2769 ntBASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Mbp-202ENSMUST00000062446 2186 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Fnbp1-208ENSMUST00000113560 4726 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Gm5682-201ENSMUST00000173402 505 ntBASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Gm5253-201ENSMUST00000187104 1025 ntBASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Gm9682-201ENSMUST00000197505 556 ntBASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 AC161829.1-201ENSMUST00000220298 281 ntBASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Mtus2-201ENSMUST00000071878 1211 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 1600014C10Rik-208ENSMUST00000179525 2326 ntTSL 2 BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Il6ra-202ENSMUST00000197679 8639 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Bahd1-201ENSMUST00000036578 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
Ccdc40Q8BI79 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Snx19-201ENSMUST00000164099 5762 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Nupr1l-201ENSMUST00000178355 1827 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Slc11a2-201ENSMUST00000023774 3025 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Cpne4-201ENSMUST00000057742 3959 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Ppp1r18-204ENSMUST00000144382 2536 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Stat3-201ENSMUST00000092671 2927 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Nfatc2ip-201ENSMUST00000075671 3388 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Araf-203ENSMUST00000122312 2854 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 9130024F11Rik-202ENSMUST00000185204 2628 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Gucd1-201ENSMUST00000039796 3500 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Pcdha8-201ENSMUST00000194038 5338 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Hoxa3-201ENSMUST00000114434 2591 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Ccdc40Q8BI79 Ptn-202ENSMUST00000201321 2558 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms