Protein–RNA interactions for Protein: Q6Q899

Ddx58, Probable ATP-dependent RNA helicase DDX58, mousemouse

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx58Q6Q899 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ddx58Q6Q899 Gm38294-201ENSMUST00000192831 381 ntBASIC18.32■□□□□ 0.52
Ddx58Q6Q899 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ddx58Q6Q899 Nap1l1-208ENSMUST00000219961 1512 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Ddx58Q6Q899 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC18.32■□□□□ 0.52
Ddx58Q6Q899 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ddx58Q6Q899 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Ddx58Q6Q899 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Mapk9-205ENSMUST00000109179 4682 ntTSL 5 BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Capg-203ENSMUST00000114072 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Mapk9-209ENSMUST00000164643 4682 ntTSL 5 BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Hist3h2bb-ps-201ENSMUST00000117558 465 ntBASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Gm17837-201ENSMUST00000186435 985 ntBASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Olfr286-202ENSMUST00000205305 969 ntBASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 9930021J03Rik-204ENSMUST00000177155 6632 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 A530083I20Rik-203ENSMUST00000214426 1855 ntTSL 5 BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Ptprs-211ENSMUST00000223859 5588 ntBASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Ddx58Q6Q899 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Tmem8b-203ENSMUST00000107866 4998 ntTSL 5 BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Gm13453-201ENSMUST00000118708 357 ntBASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Gm15384-201ENSMUST00000138832 486 ntTSL 5 BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Gm9726-201ENSMUST00000180321 678 ntBASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Gm27306-201ENSMUST00000183970 107 ntBASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Stat3-207ENSMUST00000138438 2506 ntTSL 5 BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Ddx58Q6Q899 Gba2-201ENSMUST00000030189 3544 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Trbc1-201ENSMUST00000103291 512 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Trbc2-201ENSMUST00000103299 692 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Mmab-202ENSMUST00000112245 644 ntTSL 3 BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Gm9182-201ENSMUST00000217829 639 ntBASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Gm6888-201ENSMUST00000221983 706 ntBASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Aif1-201ENSMUST00000025257 847 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Hrasls5-201ENSMUST00000025929 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC18.29■□□□□ 0.52
Ddx58Q6Q899 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms