Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
ShhQ62226 Zfp358-203ENSMUST00000208423 2200 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
ShhQ62226 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC13.86□□□□□ -0.19
ShhQ62226 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
ShhQ62226 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
ShhQ62226 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Gm15427-201ENSMUST00000117288 531 ntBASIC13.86□□□□□ -0.19
ShhQ62226 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC13.86□□□□□ -0.19
ShhQ62226 A530058N18Rik-205ENSMUST00000143993 550 ntTSL 3 BASIC13.86□□□□□ -0.19
ShhQ62226 Bcl2l14-206ENSMUST00000163589 2131 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
ShhQ62226 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC13.86□□□□□ -0.19
ShhQ62226 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC13.86□□□□□ -0.19
ShhQ62226 Gm20337-201ENSMUST00000219062 1118 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Lamtor1-201ENSMUST00000033131 1119 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Erp29-201ENSMUST00000052590 1123 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Gm16425-201ENSMUST00000118143 3130 ntBASIC13.86□□□□□ -0.19
ShhQ62226 Iqcb1-201ENSMUST00000023535 2257 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Scube2-203ENSMUST00000106729 3563 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Fzd6-202ENSMUST00000179165 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
ShhQ62226 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Tmem37-201ENSMUST00000056089 1311 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Gm14026-201ENSMUST00000120625 1789 ntBASIC13.86□□□□□ -0.19
ShhQ62226 Fbxo5-201ENSMUST00000019907 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
ShhQ62226 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
ShhQ62226 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC13.86□□□□□ -0.19
ShhQ62226 Crybg1-201ENSMUST00000020017 6608 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
ShhQ62226 Ablim3-201ENSMUST00000049378 4532 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ShhQ62226 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ShhQ62226 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ShhQ62226 Nf2-201ENSMUST00000053079 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ShhQ62226 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
ShhQ62226 Tmco1-204ENSMUST00000195015 1573 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ShhQ62226 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
ShhQ62226 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC13.85□□□□□ -0.19
ShhQ62226 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC13.85□□□□□ -0.19
ShhQ62226 Mir6990-201ENSMUST00000183724 91 ntBASIC13.85□□□□□ -0.19
ShhQ62226 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC13.85□□□□□ -0.19
ShhQ62226 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC13.85□□□□□ -0.19
ShhQ62226 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
ShhQ62226 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
ShhQ62226 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC13.85□□□□□ -0.19
ShhQ62226 Ccdc182-201ENSMUST00000037268 1204 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
ShhQ62226 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ShhQ62226 Med8-203ENSMUST00000084319 1134 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
ShhQ62226 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
ShhQ62226 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ShhQ62226 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
ShhQ62226 Tchh-201ENSMUST00000064257 5823 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
ShhQ62226 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC13.85□□□□□ -0.19
ShhQ62226 Lpar5-203ENSMUST00000171989 1458 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
ShhQ62226 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ShhQ62226 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
ShhQ62226 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Suv39h2-201ENSMUST00000027956 4327 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
ShhQ62226 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
ShhQ62226 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Gm11185-201ENSMUST00000117732 1007 ntBASIC13.84□□□□□ -0.19
ShhQ62226 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC13.84□□□□□ -0.19
ShhQ62226 Hpca-207ENSMUST00000139450 812 ntAPPRIS P1 TSL 3 BASIC13.84□□□□□ -0.19
ShhQ62226 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC13.84□□□□□ -0.19
ShhQ62226 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Gm43474-201ENSMUST00000196415 774 ntBASIC13.84□□□□□ -0.19
ShhQ62226 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
ShhQ62226 Hist1h2al-201ENSMUST00000091708 339 ntBASIC13.84□□□□□ -0.19
ShhQ62226 H2-Q10-201ENSMUST00000068291 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC13.84□□□□□ -0.19
ShhQ62226 Gm12866-201ENSMUST00000128998 1671 ntTSL 2 BASIC13.84□□□□□ -0.19
ShhQ62226 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
ShhQ62226 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
Retrieved 100 of 76,532 protein–RNA pairs in 49.2 ms