Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nr1h4Q60641 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Nr1h4Q60641 AI849053-201ENSMUST00000181021 2658 ntTSL 3 BASIC14.16□□□□□ -0.14
Nr1h4Q60641 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Pomt2-201ENSMUST00000037788 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Ptpn6-203ENSMUST00000171549 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Scarf1-202ENSMUST00000118243 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Stxbp2-207ENSMUST00000160708 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Ppp2r5e-205ENSMUST00000220035 3135 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Bag6-202ENSMUST00000166426 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Smtnl2-202ENSMUST00000108500 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Gm37297-201ENSMUST00000192974 2384 ntBASIC14.15□□□□□ -0.14
Nr1h4Q60641 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Gm21009-201ENSMUST00000197169 1669 ntBASIC14.15□□□□□ -0.14
Nr1h4Q60641 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Gm12008-201ENSMUST00000117791 755 ntBASIC14.15□□□□□ -0.14
Nr1h4Q60641 Tpm3-205ENSMUST00000121503 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Gm23547-201ENSMUST00000158210 271 ntBASIC14.15□□□□□ -0.14
Nr1h4Q60641 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Olfr571-201ENSMUST00000061738 969 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Sapcd2-201ENSMUST00000028329 3121 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Spock2-201ENSMUST00000121820 5238 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Rbm22-201ENSMUST00000025506 2210 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Pcdhga8-201ENSMUST00000066149 4730 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Reep1-201ENSMUST00000121469 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 Npas3-204ENSMUST00000223358 3143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Nr1h4Q60641 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
Nr1h4Q60641 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC14.15□□□□□ -0.15
Nr1h4Q60641 Ralgds-203ENSMUST00000113893 3683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Wnt11-201ENSMUST00000067495 3451 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Gm10605-202ENSMUST00000183019 3198 ntBASIC14.14□□□□□ -0.15
Nr1h4Q60641 Neto1-201ENSMUST00000058829 3531 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Mtdh-201ENSMUST00000022865 6919 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Eef1e1-201ENSMUST00000001757 2553 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Ubqln1-201ENSMUST00000058735 3686 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Fam169b-202ENSMUST00000125685 2821 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Gm43767-201ENSMUST00000198933 381 ntBASIC14.14□□□□□ -0.15
Nr1h4Q60641 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Nr1h4Q60641 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Nr1h4Q60641 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Map3k9-202ENSMUST00000222322 3303 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Fuca1-201ENSMUST00000030434 2525 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Ncor2-203ENSMUST00000111393 8661 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Rassf5-203ENSMUST00000112442 3388 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Gm11453-201ENSMUST00000117318 1007 ntBASIC14.13□□□□□ -0.15
Nr1h4Q60641 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Gm27357-201ENSMUST00000183754 135 ntBASIC14.13□□□□□ -0.15
Nr1h4Q60641 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Syt17-204ENSMUST00000203796 2957 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Nr1h4Q60641 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 27.6 ms