Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm8749-201ENSMUST00000117737 331 ntBASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Gm15460-201ENSMUST00000118147 391 ntBASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Myl3-203ENSMUST00000136695 614 ntAPPRIS ALT2 TSL 3 BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Gm17634-201ENSMUST00000181383 1285 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Gm7558-201ENSMUST00000193221 1165 ntBASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Cnpy2-201ENSMUST00000026446 763 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Sirt5-207ENSMUST00000221515 1793 ntTSL 5 BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 B3galt4-201ENSMUST00000087543 1569 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Lrp12-202ENSMUST00000110305 4244 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Tyro3-201ENSMUST00000028763 3989 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ddb1Q3U1J4 Ascc1-201ENSMUST00000050516 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 BC001981-202ENSMUST00000191393 1545 ntBASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 Cndp2-202ENSMUST00000168419 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 Mir692-1-201ENSMUST00000102263 109 ntBASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 Gm8835-201ENSMUST00000173096 1169 ntBASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 Gm2885-201ENSMUST00000181895 1442 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Ddb1Q3U1J4 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Tmem109-207ENSMUST00000147699 1096 ntTSL 2 BASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Dhrs2-202ENSMUST00000165432 849 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Gm27839-201ENSMUST00000184242 106 ntBASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Slc35d2-202ENSMUST00000220792 917 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Tmem179-202ENSMUST00000222836 521 ntTSL 5 BASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Dpm3-201ENSMUST00000040824 404 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Gm7292-201ENSMUST00000194706 2527 ntBASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddb1Q3U1J4 Gm42900-201ENSMUST00000197184 2167 ntBASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Gm4219-201ENSMUST00000168140 2143 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Vhl-ps1-201ENSMUST00000174813 597 ntBASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Ighv8-8-201ENSMUST00000192591 358 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Olfr286-202ENSMUST00000205305 969 ntBASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Ngf-201ENSMUST00000035952 904 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Gm10313-201ENSMUST00000095320 1002 ntBASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddb1Q3U1J4 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Ank3-223ENSMUST00000182557 1569 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Pla2g2e-203ENSMUST00000105804 786 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Gm6244-201ENSMUST00000178732 841 ntBASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Tcta-203ENSMUST00000195615 597 ntTSL 5 BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Gm4756-204ENSMUST00000209038 990 ntTSL 5 BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Spata33-205ENSMUST00000212523 486 ntTSL 3 BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Pla2g2e-201ENSMUST00000030531 854 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 AC154527.2-201ENSMUST00000225256 1466 ntBASIC18.68■□□□□ 0.58
Ddb1Q3U1J4 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 23.8 ms