Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Cklf-201ENSMUST00000034342 667 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb1P63158 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Hmgb1P63158 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb1P63158 Gm5934-201ENSMUST00000120734 2588 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Hmgb1P63158 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb1P63158 Pqlc1-203ENSMUST00000123750 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb1P63158 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb1P63158 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb1P63158 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Hmgb1P63158 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb1P63158 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb1P63158 Slc43a1-201ENSMUST00000028469 2539 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Hmgb1P63158 Dnase2a-201ENSMUST00000003910 1715 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Hmgb1P63158 Trib1-201ENSMUST00000067543 4330 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Hmgb1P63158 Ralgds-201ENSMUST00000028170 3590 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.21
Hmgb1P63158 Dhx9-201ENSMUST00000042141 4616 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
Hmgb1P63158 Chaf1b-202ENSMUST00000117099 1894 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
Hmgb1P63158 Tomm70a-201ENSMUST00000166897 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Hmgb1P63158 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Hmgb1P63158 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Hmgb1P63158 Gabra4-201ENSMUST00000031121 4108 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
Hmgb1P63158 Mus81-202ENSMUST00000124334 2067 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Hmgb1P63158 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC16.33■□□□□ 0.2
Hmgb1P63158 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC16.33■□□□□ 0.2
Hmgb1P63158 Gm11455-201ENSMUST00000149285 733 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb1P63158 4930556N13Rik-201ENSMUST00000173677 1034 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb1P63158 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC16.33■□□□□ 0.2
Hmgb1P63158 Gm45167-201ENSMUST00000208007 322 ntBASIC16.33■□□□□ 0.2
Hmgb1P63158 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb1P63158 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb1P63158 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb1P63158 Ablim2-205ENSMUST00000114205 2579 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Hmgb1P63158 Zfand3-201ENSMUST00000057897 2617 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb1P63158 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb1P63158 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb1P63158 Bbx-204ENSMUST00000114477 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb1P63158 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb1P63158 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC16.33■□□□□ 0.2
Hmgb1P63158 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
Hmgb1P63158 AC130669.1-201ENSMUST00000228537 1672 ntBASIC16.33■□□□□ 0.2
Hmgb1P63158 Comt-202ENSMUST00000115609 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb1P63158 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Hmgb1P63158 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb1P63158 Rexo4-201ENSMUST00000064244 2281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
Hmgb1P63158 Carlr-201ENSMUST00000181515 2574 ntBASIC16.33■□□□□ 0.2
Hmgb1P63158 Ankrd13b-202ENSMUST00000092892 3336 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
Hmgb1P63158 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb1P63158 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb1P63158 Galnt2-201ENSMUST00000034458 4113 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb1P63158 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb1P63158 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC16.32■□□□□ 0.2
Hmgb1P63158 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb1P63158 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC16.32■□□□□ 0.2
Hmgb1P63158 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb1P63158 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Hmgb1P63158 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC16.32■□□□□ 0.2
Hmgb1P63158 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC16.32■□□□□ 0.2
Hmgb1P63158 Gm10459-201ENSMUST00000202708 1155 ntBASIC16.32■□□□□ 0.2
Hmgb1P63158 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
Hmgb1P63158 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
Hmgb1P63158 AV026068-213ENSMUST00000223675 1171 ntBASIC16.32■□□□□ 0.2
Hmgb1P63158 Treml1-204ENSMUST00000224001 1220 ntAPPRIS P2 BASIC16.32■□□□□ 0.2
Hmgb1P63158 Ap5m1-205ENSMUST00000227431 3757 ntBASIC16.32■□□□□ 0.2
Hmgb1P63158 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb1P63158 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb1P63158 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb1P63158 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb1P63158 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb1P63158 Erbb2-201ENSMUST00000058295 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb1P63158 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb1P63158 Hnf4a-202ENSMUST00000109411 4362 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb1P63158 Cant1-201ENSMUST00000017620 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb1P63158 Atp13a3-202ENSMUST00000100013 7310 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.2
Hmgb1P63158 Slc38a7-201ENSMUST00000040481 3333 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb1P63158 Gm10676-201ENSMUST00000098778 3221 ntBASIC16.32■□□□□ 0.2
Hmgb1P63158 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Hmgb1P63158 Zfp36-202ENSMUST00000209061 2465 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
Hmgb1P63158 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb1P63158 Mms22l-201ENSMUST00000050446 4261 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb1P63158 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb1P63158 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb1P63158 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb1P63158 Tle1-203ENSMUST00000074216 4369 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
Hmgb1P63158 Klhl9-201ENSMUST00000094993 4174 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Hmgb1P63158 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Hmgb1P63158 Gm5366-201ENSMUST00000215494 1338 ntBASIC16.31■□□□□ 0.2
Hmgb1P63158 Vps26a-202ENSMUST00000105447 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb1P63158 Dtd2-201ENSMUST00000021339 2564 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb1P63158 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb1P63158 Gm12008-201ENSMUST00000117791 755 ntBASIC16.31■□□□□ 0.2
Hmgb1P63158 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Hmgb1P63158 Gm18246-201ENSMUST00000221023 728 ntBASIC16.31■□□□□ 0.2
Hmgb1P63158 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb1P63158 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb1P63158 Mcidas-201ENSMUST00000092089 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb1P63158 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb1P63158 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Hmgb1P63158 Gm3739-201ENSMUST00000165744 2011 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Hmgb1P63158 Capn12-201ENSMUST00000066880 3040 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Hmgb1P63158 Ldlrap1-201ENSMUST00000037828 6549 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms