Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC27.19■■□□□ 1.94
Scn11aQ9R053 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC27.19■■□□□ 1.94
Scn11aQ9R053 St7-207ENSMUST00000115418 1678 ntTSL 5 BASIC27.18■■□□□ 1.94
Scn11aQ9R053 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC27.18■■□□□ 1.94
Scn11aQ9R053 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Scn11aQ9R053 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
Scn11aQ9R053 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
Scn11aQ9R053 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
Scn11aQ9R053 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
Scn11aQ9R053 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC27.16■■□□□ 1.94
Scn11aQ9R053 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC27.16■■□□□ 1.94
Scn11aQ9R053 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC27.16■■□□□ 1.94
Scn11aQ9R053 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
Scn11aQ9R053 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC27.16■■□□□ 1.94
Scn11aQ9R053 6430628N08Rik-202ENSMUST00000165938 1602 ntTSL 5 BASIC27.15■■□□□ 1.94
Scn11aQ9R053 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Scn11aQ9R053 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Scn11aQ9R053 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
Scn11aQ9R053 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC27.15■■□□□ 1.94
Scn11aQ9R053 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Scn11aQ9R053 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
Scn11aQ9R053 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
Scn11aQ9R053 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
Scn11aQ9R053 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
Scn11aQ9R053 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC27.13■■□□□ 1.93
Scn11aQ9R053 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC27.13■■□□□ 1.93
Scn11aQ9R053 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC27.13■■□□□ 1.93
Scn11aQ9R053 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
Scn11aQ9R053 Gm43566-201ENSMUST00000196851 808 ntBASIC27.12■■□□□ 1.93
Scn11aQ9R053 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
Scn11aQ9R053 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.93
Scn11aQ9R053 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC27.11■■□□□ 1.93
Scn11aQ9R053 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC27.11■■□□□ 1.93
Scn11aQ9R053 Arhgap9-201ENSMUST00000069548 1782 ntAPPRIS P2 TSL 1 (best) BASIC27.1■■□□□ 1.93
Scn11aQ9R053 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
Scn11aQ9R053 Gm7199-201ENSMUST00000118327 1485 ntBASIC27.1■■□□□ 1.93
Scn11aQ9R053 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC27.1■■□□□ 1.93
Scn11aQ9R053 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC27.1■■□□□ 1.93
Scn11aQ9R053 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Scn11aQ9R053 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC27.1■■□□□ 1.93
Scn11aQ9R053 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Scn11aQ9R053 Capns1-203ENSMUST00000126116 1429 ntAPPRIS P2 TSL 1 (best) BASIC27.1■■□□□ 1.93
Scn11aQ9R053 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC27.09■■□□□ 1.93
Scn11aQ9R053 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Scn11aQ9R053 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Scn11aQ9R053 Plpp5-201ENSMUST00000068916 1483 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
Scn11aQ9R053 AC164433.2-201ENSMUST00000226346 1701 ntBASIC27.09■■□□□ 1.93
Scn11aQ9R053 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC27.08■■□□□ 1.93
Scn11aQ9R053 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC27.08■■□□□ 1.93
Scn11aQ9R053 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Scn11aQ9R053 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
Scn11aQ9R053 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC27.07■■□□□ 1.92
Scn11aQ9R053 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Scn11aQ9R053 Gm14117-201ENSMUST00000122417 843 ntBASIC27.07■■□□□ 1.92
Scn11aQ9R053 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC27.07■■□□□ 1.92
Scn11aQ9R053 Rps24-207ENSMUST00000224568 714 ntBASIC27.07■■□□□ 1.92
Scn11aQ9R053 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC27.07■■□□□ 1.92
Scn11aQ9R053 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC27.06■■□□□ 1.92
Scn11aQ9R053 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Scn11aQ9R053 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC27.06■■□□□ 1.92
Scn11aQ9R053 Gm45444-201ENSMUST00000211394 898 ntBASIC27.06■■□□□ 1.92
Scn11aQ9R053 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
Scn11aQ9R053 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC27.06■■□□□ 1.92
Scn11aQ9R053 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
Scn11aQ9R053 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC27.05■■□□□ 1.92
Scn11aQ9R053 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC27.05■■□□□ 1.92
Scn11aQ9R053 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Scn11aQ9R053 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC27.05■■□□□ 1.92
Scn11aQ9R053 Gm10837-201ENSMUST00000100294 1536 ntAPPRIS P1 BASIC27.05■■□□□ 1.92
Scn11aQ9R053 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC27.05■■□□□ 1.92
Scn11aQ9R053 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC27.05■■□□□ 1.92
Scn11aQ9R053 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Scn11aQ9R053 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Scn11aQ9R053 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
Scn11aQ9R053 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC27.03■■□□□ 1.92
Scn11aQ9R053 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
Scn11aQ9R053 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Scn11aQ9R053 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
Scn11aQ9R053 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC27.03■■□□□ 1.92
Scn11aQ9R053 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Scn11aQ9R053 AC117769.4-201ENSMUST00000225679 685 ntBASIC27.03■■□□□ 1.92
Scn11aQ9R053 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
Scn11aQ9R053 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC27.03■■□□□ 1.92
Scn11aQ9R053 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
Scn11aQ9R053 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC27.02■■□□□ 1.92
Scn11aQ9R053 Gm13238-201ENSMUST00000117655 780 ntBASIC27.02■■□□□ 1.92
Scn11aQ9R053 Gm15820-201ENSMUST00000201566 728 ntBASIC27.02■■□□□ 1.92
Scn11aQ9R053 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Scn11aQ9R053 Cmas-201ENSMUST00000032419 1760 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
Scn11aQ9R053 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC27.02■■□□□ 1.92
Scn11aQ9R053 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Scn11aQ9R053 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC27.01■■□□□ 1.91
Scn11aQ9R053 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC27.01■■□□□ 1.91
Scn11aQ9R053 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Scn11aQ9R053 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC27■■□□□ 1.91
Scn11aQ9R053 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC26.99■■□□□ 1.91
Scn11aQ9R053 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Scn11aQ9R053 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Scn11aQ9R053 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
Scn11aQ9R053 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms