Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
Hmgb3O54879 Capza2-201ENSMUST00000015877 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Hmgb3O54879 Kcnc3-203ENSMUST00000207493 2731 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Hmgb3O54879 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Hmgb3O54879 Mthfd2l-201ENSMUST00000071652 2159 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Hmgb3O54879 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Hmgb3O54879 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Hmgb3O54879 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Hmgb3O54879 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb3O54879 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
Hmgb3O54879 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb3O54879 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb3O54879 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
Hmgb3O54879 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC18.5■□□□□ 0.55
Hmgb3O54879 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Hmgb3O54879 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb3O54879 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb3O54879 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Hmgb3O54879 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb3O54879 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb3O54879 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Hmgb3O54879 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Hmgb3O54879 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb3O54879 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb3O54879 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb3O54879 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb3O54879 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb3O54879 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb3O54879 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Hmgb3O54879 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
Hmgb3O54879 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC18.48■□□□□ 0.55
Hmgb3O54879 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Hmgb3O54879 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
Hmgb3O54879 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC18.47■□□□□ 0.55
Hmgb3O54879 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Hmgb3O54879 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Hmgb3O54879 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Hmgb3O54879 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Hmgb3O54879 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Hmgb3O54879 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Hmgb3O54879 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Hmgb3O54879 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Hmgb3O54879 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Hmgb3O54879 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
Hmgb3O54879 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
Hmgb3O54879 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Hmgb3O54879 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
Hmgb3O54879 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Hmgb3O54879 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
Hmgb3O54879 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
Hmgb3O54879 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
Hmgb3O54879 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
Hmgb3O54879 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
Hmgb3O54879 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Hmgb3O54879 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC18.44■□□□□ 0.54
Hmgb3O54879 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Hmgb3O54879 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Hmgb3O54879 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Hmgb3O54879 Dhrs13os-201ENSMUST00000150471 2429 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
Hmgb3O54879 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
Hmgb3O54879 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC18.42■□□□□ 0.54
Hmgb3O54879 Bean1-205ENSMUST00000212979 2131 ntAPPRIS P4 TSL 5 BASIC18.42■□□□□ 0.54
Hmgb3O54879 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Hmgb3O54879 Gm42699-201ENSMUST00000198104 1657 ntBASIC18.41■□□□□ 0.54
Hmgb3O54879 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Hmgb3O54879 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Hmgb3O54879 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Hmgb3O54879 Gm43863-201ENSMUST00000203822 1192 ntBASIC18.41■□□□□ 0.54
Hmgb3O54879 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
Hmgb3O54879 Particl-201ENSMUST00000205370 1560 ntBASIC18.41■□□□□ 0.54
Hmgb3O54879 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Hmgb3O54879 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
Hmgb3O54879 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Hmgb3O54879 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
Hmgb3O54879 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hmgb3O54879 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC18.4■□□□□ 0.54
Hmgb3O54879 Rfxap-201ENSMUST00000044373 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Hmgb3O54879 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Hmgb3O54879 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.54
Hmgb3O54879 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Hmgb3O54879 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Hmgb3O54879 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Hmgb3O54879 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hmgb3O54879 Gm6277-202ENSMUST00000224036 2779 ntBASIC18.38■□□□□ 0.53
Hmgb3O54879 Tirap-207ENSMUST00000177129 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hmgb3O54879 AC157572.2-201ENSMUST00000226970 908 ntBASIC18.38■□□□□ 0.53
Hmgb3O54879 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hmgb3O54879 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hmgb3O54879 Sorcs2-202ENSMUST00000070720 2089 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Hmgb3O54879 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Hmgb3O54879 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hmgb3O54879 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Hmgb3O54879 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
Hmgb3O54879 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Hmgb3O54879 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb3O54879 Gm30023-201ENSMUST00000197970 889 ntBASIC18.37■□□□□ 0.53
Hmgb3O54879 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC18.37■□□□□ 0.53
Hmgb3O54879 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC18.37■□□□□ 0.53
Hmgb3O54879 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Hmgb3O54879 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 211.3 ms