Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Plscr3-201ENSMUST00000019605 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Lmna-203ENSMUST00000120377 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 C330018A13Rik-201ENSMUST00000127792 1599 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Gm14042-201ENSMUST00000120139 833 ntBASIC17.42■□□□□ 0.38
Scn11aQ9R053 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC17.42■□□□□ 0.38
Scn11aQ9R053 AC238811.1-201ENSMUST00000225302 441 ntBASIC17.42■□□□□ 0.38
Scn11aQ9R053 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Rhoj-202ENSMUST00000118602 2396 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Dapk1-207ENSMUST00000226059 5009 ntBASIC17.42■□□□□ 0.38
Scn11aQ9R053 4930423C22Rik-201ENSMUST00000193863 1311 ntBASIC17.42■□□□□ 0.38
Scn11aQ9R053 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Adck5-214ENSMUST00000162503 2040 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Nfkbia-201ENSMUST00000021413 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Cyp20a1-201ENSMUST00000060608 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Rxrb-202ENSMUST00000116612 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Prrxl1-203ENSMUST00000187377 1629 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Scn11aQ9R053 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Trem1-202ENSMUST00000113251 2077 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Fbxo34-201ENSMUST00000043112 2937 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC17.41■□□□□ 0.38
Scn11aQ9R053 H2afb1-201ENSMUST00000122446 348 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Pigyl-201ENSMUST00000123680 695 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Cd63-ps-201ENSMUST00000145417 875 ntBASIC17.41■□□□□ 0.38
Scn11aQ9R053 Gm9522-201ENSMUST00000182394 926 ntBASIC17.41■□□□□ 0.38
Scn11aQ9R053 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Gm7390-201ENSMUST00000212452 1216 ntBASIC17.41■□□□□ 0.38
Scn11aQ9R053 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Tnfrsf19-205ENSMUST00000225730 744 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Tmem170-201ENSMUST00000034431 3878 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Celf3-204ENSMUST00000197558 2414 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Scn11aQ9R053 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Coq7-205ENSMUST00000209146 799 ntTSL 3 BASIC17.4■□□□□ 0.38
Scn11aQ9R053 AC166349.1-201ENSMUST00000220866 695 ntBASIC17.4■□□□□ 0.38
Scn11aQ9R053 Timm9-206ENSMUST00000221367 836 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Scn11aQ9R053 AC102291.3-201ENSMUST00000226566 405 ntBASIC17.4■□□□□ 0.38
Scn11aQ9R053 Mpc1-201ENSMUST00000046754 920 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Uqcr10-201ENSMUST00000058407 434 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Igsf21-201ENSMUST00000039331 1979 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Gm13074-201ENSMUST00000124848 2735 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Fbxo46-202ENSMUST00000165913 2498 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Iqcm-201ENSMUST00000034033 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Ftcd-201ENSMUST00000001183 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Dhrs1-201ENSMUST00000002403 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Serpine3-201ENSMUST00000171692 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Mospd3-202ENSMUST00000111007 1318 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Tpi-rs2-201ENSMUST00000182471 756 ntBASIC17.4■□□□□ 0.38
Scn11aQ9R053 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Ocln-205ENSMUST00000160859 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Scn11aQ9R053 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
Scn11aQ9R053 Podn-203ENSMUST00000106709 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Scn11aQ9R053 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Scn11aQ9R053 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Scn11aQ9R053 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC17.39■□□□□ 0.37
Scn11aQ9R053 Acrbp-205ENSMUST00000112414 1498 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Scn11aQ9R053 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC17.39■□□□□ 0.37
Scn11aQ9R053 Uqcrq-203ENSMUST00000109021 405 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Scn11aQ9R053 Rnaseh2a-206ENSMUST00000128972 1141 ntTSL 2 BASIC17.39■□□□□ 0.37
Scn11aQ9R053 Gm13066-201ENSMUST00000145263 884 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Scn11aQ9R053 Il11-202ENSMUST00000163481 990 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Scn11aQ9R053 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.37
Scn11aQ9R053 Gm6916-202ENSMUST00000205523 195 ntBASIC17.39■□□□□ 0.37
Scn11aQ9R053 Hdac8-201ENSMUST00000087916 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Scn11aQ9R053 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC17.39■□□□□ 0.37
Scn11aQ9R053 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Scn11aQ9R053 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Scn11aQ9R053 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Scn11aQ9R053 Fam3a-205ENSMUST00000114142 1586 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Scn11aQ9R053 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Scn11aQ9R053 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.38■□□□□ 0.37
Scn11aQ9R053 Camk2g-217ENSMUST00000226630 1937 ntBASIC17.38■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 46.5 ms