Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Plcb1-205ENSMUST00000131552 7202 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Gm8597-201ENSMUST00000191525 1109 ntBASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Tspo-201ENSMUST00000047419 837 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Dnajc27-202ENSMUST00000049584 2934 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Tarsl2-201ENSMUST00000032728 3192 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Eif2d-202ENSMUST00000068805 2009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Gm5105-201ENSMUST00000053318 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Brf1Q8CFK2 Alas1-207ENSMUST00000141118 3399 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.46
Brf1Q8CFK2 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Disp2-204ENSMUST00000110846 1732 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Cyp4f18-201ENSMUST00000003574 1702 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Gm43598-201ENSMUST00000202482 2479 ntBASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Cops9-202ENSMUST00000112999 653 ntTSL 3 BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Gm4995-201ENSMUST00000117247 432 ntBASIC17.95■□□□□ 0.46
Brf1Q8CFK2 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Gm16026-204ENSMUST00000162652 683 ntBASIC17.95■□□□□ 0.46
Brf1Q8CFK2 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 4930513N10Rik-203ENSMUST00000145562 2803 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Hip1r-201ENSMUST00000000939 6735 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Scamp1-201ENSMUST00000022197 4259 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Six3os1-212ENSMUST00000177220 5601 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Irs2-201ENSMUST00000040514 6323 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Mfng-201ENSMUST00000018313 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC17.95■□□□□ 0.46
Brf1Q8CFK2 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Carlr-201ENSMUST00000181515 2574 ntBASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Rgs6-216ENSMUST00000200911 2626 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Rbpms-202ENSMUST00000033995 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Pmf1-201ENSMUST00000056370 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Timm10b-201ENSMUST00000058333 694 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Edem3-202ENSMUST00000187951 3115 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Gm13410-201ENSMUST00000117058 1415 ntBASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Lypd1-201ENSMUST00000027582 1447 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Pitpnm1-202ENSMUST00000100022 4512 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Hsph1-209ENSMUST00000202089 3054 ntTSL 5 BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Slc27a5-202ENSMUST00000120903 1468 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Adgrb2-201ENSMUST00000030571 4734 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Brf1Q8CFK2 Kif17-201ENSMUST00000030539 3453 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Eif2a-201ENSMUST00000029387 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 H2afy2-201ENSMUST00000020283 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Wnk2-207ENSMUST00000159559 6584 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Rftn1-201ENSMUST00000044503 4029 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC17.93■□□□□ 0.46
Brf1Q8CFK2 Gjd2-201ENSMUST00000090275 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 41.6 ms